Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001108`

染色体: Chr01 坐标: 22699351-22705197 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001108`
名称	SmilChr01G001108
描述	nuclear transcription factor Y subunit A-1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	22699351 - 22705197 / `-`

ID 对照

NCBI Gene ID	`LOC131007042`
GeneID	`131007042`
locus_tag	`-`
NCBI Name	`LOC131007042`
原始查询	`SmilChr01G001108`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear transcription factor Y subunit A-1-like
产物	nuclear transcription factor Y subunit A-1-like
Arabidopsis	`AT3G20910` (NF-YA9) nuclear factor Y, subunit A9 [Source:NCBI gene (formerly Entrezgene);Acc:821640] identity=44.9; qcov=0.688; evalue=1.7e-41; confidence=medium
Rice	`Os03g0696300` (OsHAP2D) - identity=44.1; qcov=0.85; evalue=1.03e-45; confidence=medium
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016602 (CCAAT-binding factor complex)
KEGG	-
Pfam	PF02045 (CBFB_NFYA)
InterPro	-
eggNOG	-
NR	GeneID:131007042

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790172.1`
2	Nucleoplasm	核质	0.80000	`XP_057790172.1`
3	Chromosome	染色体	0.00000	`XP_057790172.1`
4	Centromere	着丝粒	0.00000	`XP_057790172.1`
5	Chromatin	染色质	0.00000	`XP_057790172.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:22699687`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	A1,B3,B86,C53,C78
`Chr1:22699687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,B3,B86,C53,C78
`Chr1:22699703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C11,C69,D11
`Chr1:22699748`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,C32,C39,C68,D4
`Chr1:22699778`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C1,C44,C70
`Chr1:22699856`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C11,C69,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790172.1

301 aa

150

301

CBFB_NFYA

PF02045 CBFB_NFYA 111-212 aa

XP_057790173.1

301 aa

150

301

CBFB_NFYA

PF02045 CBFB_NFYA 111-212 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790172.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	111	212	7.3e-36	123.8	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
`XP_057790173.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	111	212	7.3e-36	123.8	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934190.1
TTGTTGAAAAAAACATTTTTCATTTTATTTCTTCCTCCTTAACAGAGACAAGGAGAACGACATTGGCGTAGAAATAAAAAAAACTGCGACAGTAATTTAATAAATATAAAAAAGTCCACAGAAAATACTTCTTCTCTCTCTTCAGAAATTTGATGCTATTATATAACCGATGATGTAGATATCCAATGTTTTTTATGTGTTGTGTTATCAAACAAAGTGCTGTAAGCTCAGGATACACTGGTAAAATGGGTCTCACATAG...

XM_057934189.1
AAACATTTTTCATTTTATTTCTTCCTCCTTAACAGAGACAAGGAGAACGACATTGGCGTAGAAATAAAAAAAACTGCGACAGTAATTTAATAAATATAAAAAAGTCCACAGAAAATACTTCTTCTCTCTCTTCAGAAATTTGATGCTATTATATAACCGATGATGTAGATATCCAATGTTTTTTATGTGTTGTGTTATCAAACAAAGTGCTGTAAGCTCAGGATACACTGGTAAAATGGGTCTCACATAGCTTTGTGTTT...

CDS

2 records

下载 CDS FASTA

LOC131007042
ATGCCCACGCTTACAAAAAGTAATAATAGACAAGTAGAGAAAGGACTACGAAGCATCCAGACCTCGACACCCTATGGTCAGCCTTGGTGGCAGGGTCTTGGGAGCAATGACATGCCTTCTTCAGGGCAGCAAGAAGATAGTTCCATAAATCCTGCAGCTGTGCAACCACAAGGCTCTGTTGAAGGGATCCCAAGGGATACAGAAACTACAGCTCTTCACTCTGGGTTGAATAGAAACAATGGCGACCAAGAGCAACAGCA...

Protein

2 records

下载 Protein FASTA

XP_057790172.1
MPTLTKSNNRQVEKGLRSIQTSTPYGQPWWQGLGSNDMPSSGQQEDSSINPAAVQPQGSVEGIPRDTETTALHSGLNRNNGDQEQQHLDANGQMELVGHSIMLTSYPYADPQYGGILTYGAPVHPHLLGYHPGRMPLPLEMEEEPVYVNAKQYHGILRRRQIRAKAELEKKLVKNRKPYLHESRHKHAMKRLRGSGGRFLNTKKLDGKENSASAEQSKSGETTSSQSRSPASAHLSTNSNGASHQNNERASMVQEMHKEH...

XP_057790173.1
MPTLTKSNNRQVEKGLRSIQTSTPYGQPWWQGLGSNDMPSSGQQEDSSINPAAVQPQGSVEGIPRDTETTALHSGLNRNNGDQEQQHLDANGQMELVGHSIMLTSYPYADPQYGGILTYGAPVHPHLLGYHPGRMPLPLEMEEEPVYVNAKQYHGILRRRQIRAKAELEKKLVKNRKPYLHESRHKHAMKRLRGSGGRFLNTKKLDGKENSASAEQSKSGETTSSQSRSPASAHLSTNSNGASHQNNERASMVQEMHKEH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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