当前解析结果
SmilChr01G001119| 统一新 Gene ID | SmilChr01G001119 |
|---|---|
| 名称 | SmilChr01G001119 |
| 描述 | uncharacterized SmilChr01G001119 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 22823266 - 22825677 / - |
| NCBI Gene ID | LOC131000700 |
|---|---|
| GeneID | 131000700 |
| locus_tag | - |
| NCBI Name | LOC131000700 |
| 原始查询 | SmilChr01G001119 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666]; symbol=AT3G29765; hit=AT3G29765; species=arabidopsis; confidence=high |
| 产物 | ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666]; symbol=AT3G29765; hit=AT3G29765; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G29765 (AT3G29765)ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666] identity=48.3; qcov=0.792; evalue=8.31e-118; confidence=high |
| Rice | Os02g0301400- identity=27.7; qcov=0.376; evalue=2.66e-13; confidence=low |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000700 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782753.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057782753.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782753.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782753.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782753.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:22823298 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | A10,C45 |
Chr1:22823298 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,C45 |
Chr1:22823447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr1:22823450 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B40,B49,C41,D5 |
Chr1:22823502 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B107,B50,B60,B65 |
Chr1:22823562 |
AT |
A |
1bp_deletion | frameshift_variant | 17 | A19,B1,B27,B29,B44,B48,B5,B51,B7,B89,B95,C11,C14,C44,C69,C73,D7 |
Chr1:22823577 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B36,C48 |
Chr1:22823611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:22823661 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr1:22823749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,B27,C47 |
Chr1:22823752 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr1:22823899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C2,C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782753.1PF14291
DUF4371 74-119 aa
PF05699
Dimer_Tnp_hAT 389-447 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782753.1 |
Pfam | PF14291 |
DUF4371 | Domain | 74 | 119 | 1.3e-17 | 64.9 | ZMYM1/FAM200, RNase-like domain |
XP_057782753.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 389 | 447 | 4.5e-07 | 30.3 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。