Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001135`

染色体: Chr01 坐标: 23125739-23130053 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001135`
名称	SmilChr01G001135
描述	argininosuccinate lyase, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	23125739 - 23130053 / `-`

ID 对照

NCBI Gene ID	`LOC131007055`
GeneID	`131007055`
locus_tag	`-`
NCBI Name	`LOC131007055`
原始查询	`SmilChr01G001135`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	argininosuccinate lyase, chloroplastic
产物	argininosuccinate lyase%2C chloroplastic
Arabidopsis	`AT5G10920` (AT5G10920) L-Aspartase-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:830959] identity=77.5; qcov=0.906; evalue=0; confidence=high
Rice	`Os03g0305500` (ASL1) - identity=75.9; qcov=0.902; evalue=0; confidence=high
GO	GO:0004056 (argininosuccinate lyase activity); GO:0005829 (cytosol); GO:0042450 (GO:0042450)
KEGG	smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00206 (Lyase_1); PF14698 (ASL_C2)
InterPro	-
eggNOG	-
NR	GeneID:131007055

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057790186.1`
2	Nucleus	细胞核	0.00000	`XP_057790186.1`
3	Chromosome	染色体	0.00000	`XP_057790186.1`
4	Centromere	着丝粒	0.00000	`XP_057790186.1`
5	Chromatin	染色质	0.00000	`XP_057790186.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:23125942`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B122
`Chr1:23125942`	`A`	`AT`	1bp_insertion	CDS_variant	1	B122
`Chr1:23125954`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr1:23125981`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B135
`Chr1:23125981`	`GC`	`G`	1bp_deletion	CDS_variant	1	B135
`Chr1:23126703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr1:23126725`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B110,C50
`Chr1:23128026`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr1:23128968`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,C8
`Chr1:23129431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,C8
`Chr1:23129458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr1:23129873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790186.1

510 aa

255

510

Lyase_1

ASL_C2

PF00206 Lyase_1 57-351 aa PF14698 ASL_C2 415-481 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790186.1`	Pfam	`PF00206`	Lyase_1	Domain	57	351	1.8e-68	232.0	Lyase
`XP_057790186.1`	Pfam	`PF14698`	ASL_C2	Domain	415	481	4.4e-26	91.8	Argininosuccinate lyase C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934203.1
CACGAAAATAGAAAATTAAGAAAAGCGTTTAGTATAGTGACGACGGAGCAAGAAAACATTCGACTAAACCCCGACACCCCATTTGCCCTATTTACAATGATGGAGTCGCTCTTGTTTCCCGCCGCCGAAGCCCTCCCATTTCTCTCCAAACCCTTCTCCGCCGCCCCCATTCTCAGAGCCCCAACTCCCACGCCCTCCATTCCCCGCCGCACATTCTCCGCCGCCGCCATCCAGATGAGCTCCAAGGAGGCCAAGCTCTG...

CDS

1 records

下载 CDS FASTA

LOC131007055
ATGATGGAGTCGCTCTTGTTTCCCGCCGCCGAAGCCCTCCCATTTCTCTCCAAACCCTTCTCCGCCGCCCCCATTCTCAGAGCCCCAACTCCCACGCCCTCCATTCCCCGCCGCACATTCTCCGCCGCCGCCATCCAGATGAGCTCCAAGGAGGCCAAGCTCTGGGGCGGCCGCTTCGAGGACAGCGTCACCGACGCCGTCGAGAAATTCACCGAGTCAATCTCATTCGATAAAGCCCTCTACAAGCACGACATTTTGGG...

Protein

1 records

下载 Protein FASTA

XP_057790186.1
MMESLLFPAAEALPFLSKPFSAAPILRAPTPTPSIPRRTFSAAAIQMSSKEAKLWGGRFEDSVTDAVEKFTESISFDKALYKHDILGSRAHASMLARQGLISDDDRDKILDGLDVIKGQIERGEFVWRTDREDVHMNIEAALTDLVGEPAKKLHTARSRNDQVCTDFRLWCRDAADAIVLRIRKLQAALVKLALKNENLIVPGYTHMQRAQPVLLPHLLLAYVEPLERDALRLLDCRARLNFCPLGACALAGTGLPIDRF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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