Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001147`

染色体: Chr01 坐标: 23437008-23452672 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001147`
名称	SmilChr01G001147
描述	histidine kinase CKI1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	23437008 - 23452672 / `-`

ID 对照

NCBI Gene ID	`LOC131007067`
GeneID	`131007067`
locus_tag	`-`
NCBI Name	`LOC131007067`
原始查询	`SmilChr01G001147`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histidine kinase CKI1-like
产物	histidine kinase CKI1-like
Arabidopsis	`AT2G47430` (CKI1) Signal transduction histidine kinase [Source:NCBI gene (formerly Entrezgene);Acc:819356] identity=36.3; qcov=1.14; evalue=0; confidence=medium
Rice	`Os06g0183200` (HK2) - identity=37.1; qcov=0.686; evalue=3.28e-115; confidence=medium
GO	GO:0000155 (phosphorelay sensor kinase activity); GO:0000160 (phosphorelay signal transduction system); GO:0005634 (nucleus); GO:0016310 (phosphorylation)
KEGG	-
Pfam	PF00072 (Response_reg); PF00512 (HisKA); PF02518 (HATPase_c)
InterPro	-
eggNOG	-
NR	GeneID:131007067

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057790192.1`
2	Cell membrane	细胞膜	0.20000	`XP_057790192.1`
3	Vacuole	液泡	0.20000	`XP_057790192.1`
4	Nucleus	细胞核	0.00000	`XP_057790192.1`
5	Chromosome	染色体	0.00000	`XP_057790192.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:23437355`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A22,B112,B29,B94,D2
`Chr1:23437359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr1:23437379`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B125,B70,C28,C60
`Chr1:23437380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr1:23437390`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr1:23437392`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,B112,B29,B94,D2
`Chr1:23437432`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B130,B23,C27
`Chr1:23437533`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B127,B72,B89,C73,C83
`Chr1:23437559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:23437573`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B28,C16
`Chr1:23437588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,B55,C64,C66
`Chr1:23437589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790192.1

993 aa

496

993

HisKA

HATPase_c

Response_reg

PF00512 HisKA 401-470 aa PF02518 HATPase_c 520-663 aa PF00072 Response_reg 866-986 aa

XP_057790193.1

993 aa

496

993

HisKA

HATPase_c

Response_reg

PF00512 HisKA 401-470 aa PF02518 HATPase_c 520-663 aa PF00072 Response_reg 866-986 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790192.1`	Pfam	`PF00512`	HisKA	Domain	401	470	5.1e-08	33.6	His Kinase A (phospho-acceptor) domain
`XP_057790192.1`	Pfam	`PF02518`	HATPase_c	Domain	520	663	1.7e-20	74.2	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057790192.1`	Pfam	`PF00072`	Response_reg	Domain	866	986	3.7e-18	66.4	Response regulator receiver domain
`XP_057790193.1`	Pfam	`PF00512`	HisKA	Domain	401	470	5.1e-08	33.6	His Kinase A (phospho-acceptor) domain
`XP_057790193.1`	Pfam	`PF02518`	HATPase_c	Domain	520	663	1.7e-20	74.2	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057790193.1`	Pfam	`PF00072`	Response_reg	Domain	866	986	3.7e-18	66.4	Response regulator receiver domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934209.1
TACGTCTTTTTTTCTAATGATGAAGCAAAATTCGTGGATAGTGTTGCTTCGATCCCACTTGGTTCTTCATTTTTCTGTTTCGATGATCAGAAGCATTTGAAGTTGTTGATTTTGTAAGATGAAGCAAAATTCGTTGATAGTGTTGCGTCCCGTTTGTTTCTTCGTTTTCATGATACTTGTGGTGCTGTCTTTGGCTGCTCTGTTGATCACAATATGGTTCAACAAAGTCGCAACAGTCGAAAAGGAAGTGAAGTTGATAG...

XM_057934210.1
GTCAATTTTTGACGAAACTCTTGTGTAACAATTCCTTGTTCAATTCTGATTCTTTTCTAGATTTGTGCGAAAATATCTCCCTCTCTTTCCATGTATATTCAAAATAATGATCATTTACGACACCTTCAATTTCTCAATATTAAAAAATCCAGTATGTTATGGCTATGTGAGACAGTTTCGATGATCAGAAGCATTTGAAGTTGTTGATTTTGTAAGATGAAGCAAAATTCGTTGATAGTGTTGCGTCCCGTTTGTTTCTT...

CDS

2 records

下载 CDS FASTA

LOC131007067
ATGAAGCAAAATTCGTTGATAGTGTTGCGTCCCGTTTGTTTCTTCGTTTTCATGATACTTGTGGTGCTGTCTTTGGCTGCTCTGTTGATCACAATATGGTTCAACAAAGTCGCAACAGTCGAAAAGGAAGTGAAGTTGATAGCACACAACATCCATCAACATTTCATATCTGAAATTCACAATGCAGTTGCATTCTTCTTCCCCAACAATGCTTCAGCCATCAACTTTGCCCGAATTTTGAGTTTCTCTTTGGATAACAA...

Protein

2 records

下载 Protein FASTA

XP_057790192.1
MKQNSLIVLRPVCFFVFMILVVLSLAALLITIWFNKVATVEKEVKLIAHNIHQHFISEIHNAVAFFFPNNASAINFARILSFSLDNNSNHLHFPNIEAKVAPVLFQAFSTIPYLSQISYVGLNGLLFAYGKDGDEPYALYSNSTFPARKDAEKKYTWYLQPANRDTGNLYGEATMFPAPALVKASWLQGALNSTNGYASLGTGWRNPPQDVLLLNTVRLDGNGVISLGFRMKPLIDFLVAQMGFHDGSLYLVTTDWDLPI...

XP_057790193.1
MKQNSLIVLRPVCFFVFMILVVLSLAALLITIWFNKVATVEKEVKLIAHNIHQHFISEIHNAVAFFFPNNASAINFARILSFSLDNNSNHLHFPNIEAKVAPVLFQAFSTIPYLSQISYVGLNGLLFAYGKDGDEPYALYSNSTFPARKDAEKKYTWYLQPANRDTGNLYGEATMFPAPALVKASWLQGALNSTNGYASLGTGWRNPPQDVLLLNTVRLDGNGVISLGFRMKPLIDFLVAQMGFHDGSLYLVTTDWDLPI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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