当前解析结果
SmilChr01G001153| 统一新 Gene ID | SmilChr01G001153 |
|---|---|
| 名称 | SmilChr01G001153 |
| 描述 | ABC transporter B family member 4-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 23483744 - 23488996 / - |
| NCBI Gene ID | LOC131007071 |
|---|---|
| GeneID | 131007071 |
| locus_tag | - |
| NCBI Name | LOC131007071 |
| 原始查询 | SmilChr01G001153 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 4-like |
| 产物 | ABC transporter B family member 4-like |
| Arabidopsis | AT2G47000 (ABCB4)ATP binding cassette subfamily B4 [Source:NCBI gene (formerly Entrezgene);Acc:819314] identity=60.4; qcov=1.04; evalue=0; confidence=high |
| Rice | Os01g0695700 (OsABCB4)- identity=52.5; qcov=1.04; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007071 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790198.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057790198.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057790198.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057790198.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057790198.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:23483978 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr1:23484242 |
GCC |
G |
2bp_deletion | frameshift_variant | 96 | A1,A11,A18,A2,A20,A23,A3,A4,A6,A7,B1,B100,B103,B106,B108,B109,B11,B110,B113,B115,B124,B13,B130,B131,B132,B133,B136,B16,B20,B27,B28,B30,B31,B34,B36,B45,B46,B47,B52,B53,B6,B64,B7,B71,B73,B74,B8,B80,B81,B83,B84,B88,B95,B97,C1,C16,C20,C21,C22,C23,C27,C28,C31,C32,C33,C4,C41,C44,C45,C46,C5,C50,C52,C53,C57,C58,C59,C6,C62,C63,C64,C66,C67,C68,C70,C71,C72,C73,C75,C81,C86,D3,D4,D6,D7,D9 |
Chr1:23484246 |
C |
CGT |
2bp_insertion | frameshift_variant | 96 | A1,A11,A18,A2,A20,A23,A3,A4,A6,A7,B1,B100,B103,B106,B108,B109,B11,B110,B113,B115,B124,B13,B130,B131,B132,B133,B136,B16,B20,B27,B28,B30,B31,B34,B36,B45,B46,B47,B52,B53,B6,B64,B7,B71,B73,B74,B8,B80,B81,B83,B84,B88,B95,B97,C1,C16,C20,C21,C22,C23,C27,C28,C31,C32,C33,C4,C41,C44,C45,C46,C5,C50,C52,C53,C57,C58,C59,C6,C62,C63,C64,C66,C67,C68,C70,C71,C72,C73,C75,C81,C86,D3,D4,D6,D7,D9 |
Chr1:23484272 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B61,B66,B74,C3,C74 |
Chr1:23484275 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:23484293 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr1:23484419 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:23485361 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:23485370 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr1:23485482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:23485536 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B23,B93,C27 |
Chr1:23485637 |
G |
A |
EMS_canonical_SNV | stop_gained | 88 | A1,A11,A13,A18,A2,A20,A23,A3,A4,A6,A7,B1,B100,B103,B106,B108,B109,B11,B113,B115,B13,B130,B131,B132,B133,B136,B20,B27,B28,B30,B31,B34,B36,B45,B46,B47,B52,B53,B6,B64,B7,B71,B73,B74,B78,B8,B80,B81,B83,B84,B95,B97,C1,C16,C21,C22,C23,C27,C28,C30,C31,C32,C33,C4,C44,C45,C46,C5,C50,C52,C57,C58,C59,C62,C63,C64,C66,C68,C70,C72,C73,C75,C86,D3,D4,D6,D7,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790198.1PF00664
ABC_membrane 31-304 aa
PF00005
ABC_tran 372-520 aa
PF00664
ABC_membrane 645-913 aa
PF00005
ABC_tran 985-1134 aa
XP_057790199.1PF00664
ABC_membrane 2-208 aa
PF00005
ABC_tran 276-424 aa
PF00664
ABC_membrane 549-817 aa
PF00005
ABC_tran 889-1038 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790198.1 |
Pfam | PF00664 |
ABC_membrane | Family | 31 | 304 | 4.6e-111 | 371.6 | ABC transporter transmembrane region |
XP_057790198.1 |
Pfam | PF00005 |
ABC_tran | Domain | 372 | 520 | 3.1e-67 | 226.1 | ABC transporter |
XP_057790198.1 |
Pfam | PF00664 |
ABC_membrane | Family | 645 | 913 | 4.6e-111 | 371.6 | ABC transporter transmembrane region |
XP_057790198.1 |
Pfam | PF00005 |
ABC_tran | Domain | 985 | 1134 | 3.1e-67 | 226.1 | ABC transporter |
XP_057790199.1 |
Pfam | PF00664 |
ABC_membrane | Family | 2 | 208 | 9.4e-101 | 337.8 | ABC transporter transmembrane region |
XP_057790199.1 |
Pfam | PF00005 |
ABC_tran | Domain | 276 | 424 | 2.7e-67 | 226.3 | ABC transporter |
XP_057790199.1 |
Pfam | PF00664 |
ABC_membrane | Family | 549 | 817 | 9.4e-101 | 337.8 | ABC transporter transmembrane region |
XP_057790199.1 |
Pfam | PF00005 |
ABC_tran | Domain | 889 | 1038 | 2.7e-67 | 226.3 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。