Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G001195

染色体: Chr01 坐标: 24097390-24099837 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G001195
名称SmilChr01G001195
描述protein PATRONUS 2-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向24097390 - 24099837 / -

ID 对照

NCBI Gene IDLOC131007107
GeneID131007107
locus_tag-
NCBI NameLOC131007107
原始查询SmilChr01G001195

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述protein PATRONUS 2-like
产物protein PATRONUS 2-like
ArabidopsisAT5G12360 (AT5G12360)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:831111]
identity=33.2; qcov=1.05; evalue=5.99e-21; confidence=low
Rice-
-
GOGO:0007346 (regulation of mitotic cell cycle)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131007107

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057790246.1
2 Cytoplasm 细胞质 0.20000 XP_057790246.1
3 Chromosome 染色体 0.00000 XP_057790246.1
4 Centromere 着丝粒 0.00000 XP_057790246.1
5 Chromatin 染色质 0.00000 XP_057790246.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:24097592 TA T 1bp_deletion frameshift_variant 1 A18
Chr1:24097592 TA T 1bp_deletion CDS_variant 1 A18
Chr1:24097600 C T EMS_canonical_SNV CDS_variant 1 D10
Chr1:24097603 CCT C 2bp_deletion frameshift_variant 1 C66
Chr1:24097603 CCT C 2bp_deletion CDS_variant 1 C66
Chr1:24097607 C T EMS_canonical_SNV CDS_variant 2 C33,C46
Chr1:24097638 G A EMS_canonical_SNV CDS_variant 5 B115,B20,B73,C36,C57
Chr1:24097881 G A EMS_canonical_SNV CDS_variant 4 B125,B90,B92,D6
Chr1:24098458 TG T 1bp_deletion frameshift_variant 1 A7
Chr1:24098458 TG T 1bp_deletion CDS_variant 1 A7
Chr1:24098460 CAT C 2bp_deletion frameshift_variant 1 A7
Chr1:24098460 CAT C 2bp_deletion CDS_variant 1 A7

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057934263.1
GAGTATGGCCCGGCCCATGATTCAATAGCATCTTCCTTCTTCCCGCCCATTCCCCTCTCTCTCGTCTCTCTCTCTCTCTCTCACGCGATTTTCATCGAATTTGTTCCAGAAACATCAGTGAAATATGGAAAGACCTCTCTTTCTAAAGCCATTGAGCATTCAAGATGAAAATTCTGTCATCCACCGTAAAAAAGTGGGTGCTGATGGCATATCCAAGACATCGGGGCCATTAGCAAAGAAGAGTGGAGTTGTACGTGAGA...
XM_057934264.1
CCCCCCTTTTTCTGTTTGTTTTGTTATTTGTTGTTTGCGATTTCGACTTCAAAATGAGTACAAATGCCCTTGGGAGTTCTTTGATTTCCTTTGACGCTGCGACCTGTCTCTTGTGTGAAATATGGAAAGACCTCTCTTTCTAAAGCCATTGAGCATTCAAGATGAAAATTCTGTCATCCACCGTAAAAAAGTGGGTGCTGATGGCATATCCAAGACATCGGGGCCATTAGCAAAGAAGAGTGGAGTTGTACGTGAGAGTC...

CDS

2 records

下载 CDS FASTA
LOC131007107
ATGGAAAGACCTCTCTTTCTAAAGCCATTGAGCATTCAAGATGAAAATTCTGTCATCCACCGTAAAAAAGTGGGTGCTGATGGCATATCCAAGACATCGGGGCCATTAGCAAAGAAGAGTGGAGTTGTACGTGAGAGTCGTAAAGCTCTGAATGACATTACTAATAAGTCGTCTATTCGTCCTGAGACAACCTCCAAGAGTAAAAAGTCAGGAAAGAAACAGTCTAAAGTTGTTGAAAATGGATATTCAAATCAGCAAGT...
LOC131007107
ATGGAAAGACCTCTCTTTCTAAAGCCATTGAGCATTCAAGATGAAAATTCTGTCATCCACCGTAAAAAAGTGGGTGCTGATGGCATATCCAAGACATCGGGGCCATTAGCAAAGAAGAGTGGAGTTGTACGTGAGAGTCGTAAAGCTCTGAATGACATTACTAATAAGTCGTCTATTCGTCCTGAGACAACCTCCAAGAGTAAAAAGTCAGGAAAGAAACAGTCTAAAGTTGTTGAAAATGGATATTCAAATCAGCAAGT...

Protein

2 records

下载 Protein FASTA
XP_057790246.1
MERPLFLKPLSIQDENSVIHRKKVGADGISKTSGPLAKKSGVVRESRKALNDITNKSSIRPETTSKSKKSGKKQSKVVENGYSNQQVLECEALSKKKISVHEKLNIAEEGFLHDHSKCIDAQKAAAASQLNFWDTVLPGHDSTDLIMERPKGDPDNCYPKLEELSMLEFSDWFKPHWKSPPPSPLHQDSPSAWEFEAVELLLKEDDYHVGRDVSL
XP_057790247.1
MERPLFLKPLSIQDENSVIHRKKVGADGISKTSGPLAKKSGVVRESRKALNDITNKSSIRPETTSKSKKSGKKQSKVVENGYSNQQVLECEALSKKKISVHEKLNIAEEGFLHDHSKCIDAQKAAAASQLNFWDTVLPGHDSTDLIMERPKGDPDNCYPKLEELSMLEFSDWFKPHWKSPPPSPLHQDSPSAWEFEAVELLLKEDDYHVGRDVSL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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