Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G001204

染色体: Chr01 坐标: 24255738-24262556 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G001204
名称SmilChr01G001204
描述uncharacterized SmilChr01G001204
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向24255738 - 24262556 / -

ID 对照

NCBI Gene IDLOC131007115
GeneID131007115
locus_tag-
NCBI NameLOC131007115
原始查询SmilChr01G001204

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844097]; symbol=AT1G77620; hit=AT1G77620; species=arabidopsis; confidence=low
产物P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844097]; symbol=AT1G77620; hit=AT1G77620; species=arabidopsis; confidence=low
ArabidopsisAT1G77620 (AT1G77620)
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844097]
identity=31.3; qcov=0.97; evalue=6.51e-75; confidence=low
RiceOs03g0262300
-
identity=35; qcov=0.384; evalue=6.89e-36; confidence=low
GOGO:0000077 (DNA damage checkpoint signaling); GO:0003682 (chromatin binding); GO:0006281 (DNA repair); GO:0033314 (mitotic DNA replication checkpoint signaling)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131007115

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057790251.1
2 Nucleoplasm 核质 0.80000 XP_057790251.1
3 Nuclear body 核内小体 0.60000 XP_057790251.1
4 Chromosome 染色体 0.40000 XP_057790251.1
5 Centromere 着丝粒 0.00000 XP_057790251.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:24256042 G A EMS_canonical_SNV CDS_variant 5 B105,B79,C3,C38,C39
Chr1:24256050 G A EMS_canonical_SNV CDS_variant 2 B29,C7
Chr1:24256614 G A EMS_canonical_SNV CDS_variant 1 B93
Chr1:24256711 G A EMS_canonical_SNV CDS_variant 1 B41
Chr1:24256766 G A EMS_canonical_SNV CDS_variant 3 B1,B59,B68

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057934269.1
TCTTATGATAGGATAACATACCTCTTAATTTTTCTATGCTGTTCTCCATTTTTTGAACTTATCTTTTTGGTATAAAGTTGCTAACATGGTCTTCTTGCCAGATTTGCGGTAATCCTGAATCAGTGAATCTTTTAAGCGAATGGCTTCGTCTTTGGCACACAAGGGGTTCTCAGATCACTAGGGGTTGCACTGATGAAGTAAATTGTACTCCGCGAGATGTTGATTGTGATTATCAGCAAAGTGAATCTGATGATGATGAT...
XM_057934268.1
TCTTATGATAGGATAACATACCTCTTAATTTTTCTATGCTGTTCTCCATTTTTTGAACTTATCTTTTTGGTATAAAGTTGCTAACATGGTCTTCTTGCCAGATTTGCGGTAATCCTGAATCAGTGAATCTTTTAAGCGAATGGCTTCGTCTTTGGCACACAAGGGGTTCTCAGATCACTAGGGGTTGCACTGATGAAGTAAATTGTACTCCGCGAGATGTTGATTGTGATTATCAGCAAAGTGAATCTGATGATGATGAT...

CDS

3 records

下载 CDS FASTA
LOC131007115
ATGCAATGCTCCGATGATGAAGTAATTGAACTGATACACTTACCAGATGAGGACTTGAGAGATGTATATTCATCACCTAAGAAATCAGTCTATAAGAGAACTGTTAATTGTCAGAATGAGGTCAAAACCTTGATTCTTTTTGAAGATGTGGATGCTACGATTTGTGAAGATCATGGTTTTATTACTACTATACAACAACTTGCAGTAACTGCCAAAAGGCCCATGATATTGACAAGCAATAGTGGCAATCCTGCACTCCC...
LOC131007115
ATGCAATGCTCCGATGATGAAGTAATTGAACTGATACACTTACCAGATGAGGACTTGAGAGATGTATATTCATCACCTAAGAAATCAGTCTATAAGAGAACTGTTAATTGTCAGAATGAGGTCAAAACCTTGATTCTTTTTGAAGATGTGGATGCTACGATTTGTGAAGATCATGGTTTTATTACTACTATACAACAACTTGCAGTAACTGCCAAAAGGCCCATGATATTGACAAGCAATAGTGGCAATCCTGCACTCCC...

Protein

3 records

下载 Protein FASTA
XP_057790251.1
MQCSDDEVIELIHLPDEDLRDVYSSPKKSVYKRTVNCQNEVKTLILFEDVDATICEDHGFITTIQQLAVTAKRPMILTSNSGNPALPKSLDKLEISFSLPSLDELLGLSNMICTAERAKIHPYLLQRFVDHCRGDIRRTILLLQFWCQGQTLRTGNEQPTTYWPVPFDLDAGHHILPKIIHWGCPSQLSELVAVEVVRSLALMEETKSVMGQIKVDELNYYSSEDMCMQKIEQDPIEVKKATMLSLQSLGDAECTPFEVD...
XP_057790252.1
MQCSDDEVIELIHLPDEDLRDVYSSPKKSVYKRTVNCQNEVKTLILFEDVDATICEDHGFITTIQQLAVTAKRPMILTSNSGNPALPKSLDKLEISFSLPSLDELLGLSNMICTAERAKIHPYLLQRFVDHCRGDIRRTILLLQFWCQGQTLRTGNEQPTTYWPVPFDLDAGHHILPKIIHWGCPSQLSELVAVEVVRSLALMEETKSVMGQIKVDELNYYSSEDMCMQKIEQDPIEVKKATMLSLQSLGDAECTPFEVD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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