当前解析结果
SmilChr01G001210| 统一新 Gene ID | SmilChr01G001210 |
|---|---|
| 名称 | SmilChr01G001210 |
| 描述 | uncharacterized SmilChr01G001210 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 24334079 - 24334794 / + |
| NCBI Gene ID | LOC131004083 |
|---|---|
| GeneID | 131004083 |
| locus_tag | - |
| NCBI Name | LOC131004083 |
| 原始查询 | SmilChr01G001210 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=medium |
| 产物 | hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G33406 (AT5G33406)hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333] identity=39.7; qcov=1.23; evalue=1.7e-51; confidence=medium |
| Rice | Os09g0499600- identity=28.4; qcov=1.25; evalue=3.24e-25; confidence=low |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131004083 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.40000 | XP_057786698.1 |
| 2 | Secreted | 分泌到胞外 | 0.40000 | XP_057786698.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057786698.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057786698.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057786698.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:24334191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr1:24334363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B110,B88,C22 |
Chr1:24334364 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C32,C68,D4 |
Chr1:24334396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B110,B112,B88,C22 |
Chr1:24334484 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | C55 |
Chr1:24334484 |
T |
TG |
1bp_insertion | CDS_variant | 1 | C55 |
Chr1:24334487 |
T |
TA |
1bp_insertion | frameshift_variant | 4 | B110,B112,B16,C22 |
Chr1:24334487 |
T |
TA |
1bp_insertion | CDS_variant | 4 | B110,B112,B16,C22 |
Chr1:24334488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B110,B112,B16,C22 |
Chr1:24334562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B16,C22 |
Chr1:24334575 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B66,B8,C73,D2 |
Chr1:24334578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057786698.1PF05699
Dimer_Tnp_hAT 151-191 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057786698.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 151 | 191 | 2.1e-07 | 31.4 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。