当前解析结果
SmilChr01G001251| 统一新 Gene ID | SmilChr01G001251 |
|---|---|
| 名称 | SmilChr01G001251 |
| 描述 | protein HYPER-SENSITIVITY-RELATED 4-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 25133243 - 25133875 / + |
| NCBI Gene ID | LOC131005027 |
|---|---|
| GeneID | 131005027 |
| locus_tag | - |
| NCBI Name | LOC131005027 |
| 原始查询 | SmilChr01G001251 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein HYPER-SENSITIVITY-RELATED 4-like |
| 产物 | protein HYPER-SENSITIVITY-RELATED 4-like |
| Arabidopsis | AT3G50930 (BCS1)cytochrome BC1 synthesi [Source:NCBI gene (formerly Entrezgene);Acc:824257] identity=55.7; qcov=0.924; evalue=1.97e-73; confidence=high |
| Rice | Os01g0605100- identity=53.6; qcov=0.8; evalue=2.12e-61; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005027 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057787802.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057787802.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057787802.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057787802.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057787802.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:25133253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B110,B40,B72 |
Chr1:25133275 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:25133318 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:25133330 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,B90,B92 |
Chr1:25133349 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,C25,C30 |
Chr1:25133393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr1:25133445 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,C16 |
Chr1:25133527 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr1:25133548 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B16,B18,B60,C11,C69 |
Chr1:25133556 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr1:25133565 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B110,B40,C50 |
Chr1:25133565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B110,B40,C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057787802.1PF00004
AAA 113-172 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787802.1 |
Pfam | PF00004 |
AAA | Domain | 113 | 172 | 1.8e-09 | 38.9 | ATPase family associated with various cellular activities (AAA) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。