当前解析结果
SmilChr01G001263| 统一新 Gene ID | SmilChr01G001263 |
|---|---|
| 名称 | SmilChr01G001263 |
| 描述 | uncharacterized SmilChr01G001263 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 25323688 - 25327501 / + |
| NCBI Gene ID | LOC131006424 |
|---|---|
| GeneID | 131006424 |
| locus_tag | - |
| NCBI Name | LOC131006424 |
| 原始查询 | SmilChr01G001263 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | OsHAG702; symbol=OsHAG702; hit=Os10g0415900; species=rice; confidence=low |
| 产物 | OsHAG702; symbol=OsHAG702; hit=Os10g0415900; species=rice; confidence=low |
| Arabidopsis | AT3G54610 (HAG1)histone acetyltransferase of the GNAT family 1 [Source:NCBI gene (formerly Entrezgene);Acc:824626] identity=75.9; qcov=0.351; evalue=1.17e-22; confidence=low |
| Rice | Os10g0415900 (OsHAG702)- identity=81.1; qcov=0.344; evalue=3.89e-25; confidence=low |
| GO | GO:0000123 (histone acetyltransferase complex); GO:0006338 (chromatin remodeling); GO:0010484 (histone H3 acetyltransferase activity); GO:0043966 (GO:0043966); GO:0045944 (positive regulation of transcription by RNA polymerase II) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006424 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057789576.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057789576.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789576.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789576.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789576.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:25324086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B57,C30 |
Chr1:25324129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C29,C42,C64 |
Chr1:25324181 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B12 |
Chr1:25324217 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B129,B51,C21,C77 |
Chr1:25324223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C42,C45 |
Chr1:25324225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr1:25324247 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | C57 |
Chr1:25324247 |
T |
TC |
1bp_insertion | CDS_variant | 1 | C57 |
Chr1:25324630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr1:25324631 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C4 |
Chr1:25324631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr1:25324636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B113,B138,B73,C4,C72 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。