当前解析结果
SmilChr01G001283| 统一新 Gene ID | SmilChr01G001283 |
|---|---|
| 名称 | SmilChr01G001283 |
| 描述 | uncharacterized SmilChr01G001283 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 25603850 - 25605025 / + |
| NCBI Gene ID | LOC131016732 |
|---|---|
| GeneID | 131016732 |
| locus_tag | - |
| NCBI Name | LOC131016732 |
| 原始查询 | SmilChr01G001283 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | maternal effect embryo arrest protein [Source:NCBI gene (formerly Entrezgene);Acc:819939]; symbol=AT3G07510; hit=AT3G07510; species=arabidopsis; confidence=medium |
| 产物 | maternal effect embryo arrest protein [Source:NCBI gene (formerly Entrezgene);Acc:819939]; symbol=AT3G07510; hit=AT3G07510; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G07510 (AT3G07510)maternal effect embryo arrest protein [Source:NCBI gene (formerly Entrezgene);Acc:819939] identity=52.8; qcov=0.744; evalue=4.55e-43; confidence=medium |
| Rice | Os10g0178200- identity=51.1; qcov=0.644; evalue=1.14e-40; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131016732 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057801426.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057801426.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801426.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801426.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801426.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:25604285 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C11 |
Chr1:25604345 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr1:25604389 |
C |
CAT |
2bp_insertion | frameshift_variant | 13 | A14,B112,B139,B17,B55,B86,C21,C22,C34,C44,C45,C7,D4 |
Chr1:25604391 |
A |
ACG |
2bp_insertion | frameshift_variant | 6 | A11,B131,B62,C23,C49,C7 |
Chr1:25604395 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B110,C13 |
Chr1:25604395 |
TC |
T |
1bp_deletion | CDS_variant | 2 | B110,C13 |
Chr1:25604437 |
C |
CGT |
2bp_insertion | frameshift_variant | 60 | A11,A20,A23,A25,A6,B107,B11,B112,B118,B119,B12,B131,B135,B136,B139,B14,B4,B40,B48,B51,B53,B54,B56,B57,B6,B60,B62,B63,B67,B68,B76,B8,B87,B89,B94,C20,C21,C23,C26,C27,C31,C34,C40,C42,C45,C47,C49,C50,C57,C59,C6,C61,C62,C66,C68,C7,C72,C85,C86,D10 |
Chr1:25604723 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B127,B89,B99,C1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。