Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001303`

染色体: Chr01 坐标: 25956856-25980844 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001303`
名称	SmilChr01G001303
描述	uncharacterized SmilChr01G001303
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	25956856 - 25980844 / `-`

ID 对照

NCBI Gene ID	`LOC131016878`
GeneID	`131016878`
locus_tag	`-`
NCBI Name	`LOC131016878`
原始查询	`SmilChr01G001303`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817219]; symbol=AT2G26780; hit=AT2G26780; species=arabidopsis; confidence=high
产物	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817219]; symbol=AT2G26780; hit=AT2G26780; species=arabidopsis; confidence=high
Arabidopsis	`AT2G26780` (AT2G26780) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817219] identity=63.1; qcov=1; evalue=0; confidence=high
Rice	`Os12g0134200` - identity=60.6; qcov=0.576; evalue=0; confidence=medium
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0030433 (GO:0030433); GO:0043248 (proteasome assembly); GO:0060090 (molecular adaptor activity)
KEGG	-
Pfam	PF13001 (ECM29_N); PF23702 (ARM_ECM29); PF23731 (ARM_ECM29_C); PF24492 (HEAT_ECM29)
InterPro	-
eggNOG	-
NR	GeneID:131016878

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057801656.1`
2	Cytoplasm	细胞质	0.80000	`XP_057801647.1`
3	Nucleus	细胞核	0.40000	`XP_057801647.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057801647.1`
5	Chromosome	染色体	0.00000	`XP_057801647.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:25957361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:25959395`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr1:25962265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B138,B55
`Chr1:25966462`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B22,B35,B48,C48,D2
`Chr1:25966514`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr1:25966774`	`CTA`	`C`	2bp_deletion	frameshift_variant	1	B125
`Chr1:25966774`	`CTA`	`C`	2bp_deletion	CDS_variant	1	B125
`Chr1:25968023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:25968509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B30,C2,C49,C7
`Chr1:25968546`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:25968787`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:25968823`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B22,B35,B48,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801647.1

1813 aa

906

1813

ECM29_N

ARM_ECM29

HEAT_ECM29

ARM_ECM29_C

PF13001 ECM29_N 30-511 aa PF23702 ARM_ECM29 636-726 aa PF24492 HEAT_ECM29 1262-1420 aa PF23731 ARM_ECM29_C 1595-1802 aa

XP_057801656.1

1579 aa

790

1579

ECM29_N

ARM_ECM29

HEAT_ECM29

ARM_ECM29_C

PF13001 ECM29_N 4-277 aa PF23702 ARM_ECM29 402-492 aa PF24492 HEAT_ECM29 1028-1186 aa PF23731 ARM_ECM29_C 1361-1568 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801647.1`	Pfam	`PF13001`	ECM29_N	Repeat	30	511	3.1e-123	412.9	Proteasome component ECM29, N-terminal
`XP_057801647.1`	Pfam	`PF23702`	ARM_ECM29	Repeat	636	726	7.1e-09	36.3	ECM29, ARM-like repeats
`XP_057801647.1`	Pfam	`PF24492`	HEAT_ECM29	Repeat	1262	1420	9.3e-51	172.8	Proteasome adapter and scaffold protein ECM29, HEAT-repeat domain
`XP_057801647.1`	Pfam	`PF23731`	ARM_ECM29_C	Repeat	1595	1802	5.7e-10	40.6	ECM29, C-terminal ARM-like repeats
`XP_057801656.1`	Pfam	`PF13001`	ECM29_N	Repeat	4	277	3.8e-65	221.3	Proteasome component ECM29, N-terminal
`XP_057801656.1`	Pfam	`PF23702`	ARM_ECM29	Repeat	402	492	5.7e-09	36.6	ECM29, ARM-like repeats
`XP_057801656.1`	Pfam	`PF24492`	HEAT_ECM29	Repeat	1028	1186	3.1e-51	174.4	Proteasome adapter and scaffold protein ECM29, HEAT-repeat domain
`XP_057801656.1`	Pfam	`PF23731`	ARM_ECM29_C	Repeat	1361	1568	5.2e-10	40.7	ECM29, C-terminal ARM-like repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945664.1
TTGGGTGTGGCGCACTCCGATCTTGATTTTCTACAAACACAACAATTCTTCCAAATTAGGCACTTTTATTCCAAGGGAGCAGCAGCGACACAACTCTCCATTCAATATGGCTGAGCTCTCCACCTCCGGCGCCGGCGCCGGCGCCTGGTCCTCCGCGCTCTCAGGAAAGTCTGATGACGAGAAAGAGGAACTCCTCGACAGAATGCTCACGCGATTGGCGCTATGCGACGACTCTAAGCTCCAAGACTTGCTCGCCAAGA...

XM_057945673.1
GACGCCCAGCTGGGCTTTCAACTATTCAATTTCAACGTGTTACTGGAAATGACCCCCCTGATTATGATAAGCTACGTAATAGAAAGGAATGCTTAATATAATTGAAGCTTTGGAGCTTCAATCTGAACTAGTTTATCCTATCTACATAGCCGCTTGCACGGACAGTCATGAACCTGTTATTAAAAAGGGGGAGGAGCTGTTGAAGAAGAATGCATCTGGTGTGAATTTAGATGACCAGAATCTGATCAACAAACTATTTC...

CDS

2 records

下载 CDS FASTA

LOC131016878
ATGGCTGAGCTCTCCACCTCCGGCGCCGGCGCCGGCGCCTGGTCCTCCGCGCTCTCAGGAAAGTCTGATGACGAGAAAGAGGAACTCCTCGACAGAATGCTCACGCGATTGGCGCTATGCGACGACTCTAAGCTCCAAGACTTGCTCGCCAAGATTCTTCCCCTCTCCATTGCTGCCCTTTCATCTGCTTCCGCTCCTCTCCGCAATAAAGTTATTGAAATCCTCAGCCATGTGAACAAGAGAGTGAAGCACCAGGGAAC...

LOC131016878
ATGCTTAATATAATTGAAGCTTTGGAGCTTCAATCTGAACTAGTTTATCCTATCTACATAGCCGCTTGCACGGACAGTCATGAACCTGTTATTAAAAAGGGGGAGGAGCTGTTGAAGAAGAATGCATCTGGTGTGAATTTAGATGACCAGAATCTGATCAACAAACTATTTCTATTATTTAATGGAACCACTGGTTCTGAGAACATTGCTCCAGATTCCAAAGTAAATCCTGGAAATCTAGCCCTGAGAGTGAGGCTGAT...

Protein

2 records

下载 Protein FASTA

XP_057801647.1
MAELSTSGAGAGAWSSALSGKSDDEKEELLDRMLTRLALCDDSKLQDLLAKILPLSIAALSSASAPLRNKVIEILSHVNKRVKHQGTIGLPLSDLWKLYMESSSAPMVRNFCIVYIEMAIDRVQKEEKQLLAPVFLTNISKLPSKHQDILLKITAKVIGECHTSQVNDEVLERYRALVGSKDLEIFLEFCLHTILYQPSSQSGGRPAGLSTIQFQRVTGNDPPDYDKLRNRKTGMLNIIEALELQSELVYPIYIAACTDS...

XP_057801656.1
MLNIIEALELQSELVYPIYIAACTDSHEPVIKKGEELLKKNASGVNLDDQNLINKLFLLFNGTTGSENIAPDSKVNPGNLALRVRLMSIFCRSITAANSFPSTLQCIFGCIFGADATSRSKQLGMEFTVWVFKHARMEQLKLMGPIILSGILKTLDNVSSLDSDAVARETRSFCFQAIGLLSQRMPQLFRDKTDVAVRLFDALKLEGQYLRLIVQEATASLSVAYKDAPPKVLKDVELLLLQNSQVEQSEVRFCAVRWAT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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