当前解析结果
SmilChr01G001322| 统一新 Gene ID | SmilChr01G001322 |
|---|---|
| 名称 | SmilChr01G001322 |
| 描述 | L-ascorbate oxidase-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 26259536 - 26262315 / + |
| NCBI Gene ID | LOC131017046 |
|---|---|
| GeneID | 131017046 |
| locus_tag | - |
| NCBI Name | LOC131017046 |
| 原始查询 | SmilChr01G001322 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | L-ascorbate oxidase-like |
| 产物 | L-ascorbate oxidase-like |
| Arabidopsis | AT5G21105 (AT5G21105)Plant L-ascorbate oxidase [Source:NCBI gene (formerly Entrezgene);Acc:832235] identity=66.4; qcov=0.995; evalue=0; confidence=high |
| Rice | Os06g0567200 (OsAAO1)- identity=64.2; qcov=1; evalue=0; confidence=high |
| GO | GO:0005507 (copper ion binding); GO:0005576 (extracellular region); GO:0009506 (plasmodesma); GO:0016491 (oxidoreductase activity) |
| KEGG | smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00394 (Cu-oxidase); PF07731 (Cu-oxidase_2); PF07732 (Cu-oxidase_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017046 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057801836.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057801836.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057801836.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057801836.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057801836.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:26259678 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | A4 |
Chr1:26259678 |
A |
AG |
1bp_insertion | CDS_variant | 1 | A4 |
Chr1:26259792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,B131,B27,C79 |
Chr1:26259797 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B122,B13,B140,B75 |
Chr1:26259798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B27,C79 |
Chr1:26260182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B113,B66,B82,B88,C10 |
Chr1:26260230 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,B139 |
Chr1:26260270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,B77 |
Chr1:26260271 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B2,B77,B90 |
Chr1:26260569 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,C46 |
Chr1:26260570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr1:26261261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801836.1PF07732
Cu-oxidase_3 30-142 aa
PF00394
Cu-oxidase 159-319 aa
PF07731
Cu-oxidase_2 413-545 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801836.1 |
Pfam | PF07732 |
Cu-oxidase_3 | Domain | 30 | 142 | 3.6e-43 | 147.1 | Multicopper oxidase |
XP_057801836.1 |
Pfam | PF00394 |
Cu-oxidase | Domain | 159 | 319 | 2e-44 | 152.2 | Multicopper oxidase |
XP_057801836.1 |
Pfam | PF07731 |
Cu-oxidase_2 | Domain | 413 | 545 | 4.3e-42 | 143.8 | Multicopper oxidase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。