Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001326`

染色体: Chr01 坐标: 26372512-26378022 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001326`
名称	SmilChr01G001326
描述	GCN5-related N-acetyltransferase 6, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	26372512 - 26378022 / `+`

ID 对照

NCBI Gene ID	`LOC131017078`
GeneID	`131017078`
locus_tag	`-`
NCBI Name	`LOC131017078`
原始查询	`SmilChr01G001326`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GCN5-related N-acetyltransferase 6, chloroplastic-like
产物	GCN5-related N-acetyltransferase 6%2C chloroplastic-like
Arabidopsis	`AT2G06025` (AT2G06025) Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:815157] identity=54.2; qcov=0.971; evalue=5e-75; confidence=high
Rice	`Os03g0177000` - identity=50.5; qcov=0.967; evalue=1.31e-62; confidence=high
GO	GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups)
KEGG	-
Pfam	PF00583 (Acetyltransf_1); PF08445 (FR47); PF13508 (Acetyltransf_7); PF13673 (Acetyltransf_10)
InterPro	-
eggNOG	-
NR	GeneID:131017078

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057801838.1`
2	Cytosol	细胞质基质	1.00000	`XP_057801839.1`
3	Chloroplast stroma	叶绿体基质	0.80000	`XP_057801838.1`
4	Nucleus	细胞核	0.60000	`XP_057801839.1`
5	Cytoplasm	细胞质	0.60000	`XP_057801839.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:26374463`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:26374472`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B138
`Chr1:26374472`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr1:26374926`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,C36
`Chr1:26376271`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr1:26376682`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C49,C7
`Chr1:26376683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr1:26376699`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B82,C13
`Chr1:26377774`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B2,C37,C65,D4
`Chr1:26377808`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801838.1

302 aa

151

302

Acetyltransf_1

Acetyltransf_10

FR47

Acetyltransf_7

PF00583 Acetyltransf_1 161-280 aa PF13673 Acetyltransf_10 221-285 aa PF08445 FR47 222-285 aa PF13508 Acetyltransf_7 223-281 aa

XP_057801839.1

209 aa

104

209

Acetyltransf_1

Acetyltransf_10

Acetyltransf_7

FR47

PF00583 Acetyltransf_1 68-187 aa PF13673 Acetyltransf_10 128-192 aa PF13508 Acetyltransf_7 129-188 aa PF08445 FR47 129-192 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801838.1`	Pfam	`PF00583`	Acetyltransf_1	Family	161	280	2e-13	51.4	Acetyltransferase (GNAT) family
`XP_057801838.1`	Pfam	`PF13673`	Acetyltransf_10	Domain	221	285	4.9e-07	30.5	Acetyltransferase (GNAT) domain
`XP_057801838.1`	Pfam	`PF08445`	FR47	Family	222	285	8.3e-10	39.2	FR47-like protein
`XP_057801838.1`	Pfam	`PF13508`	Acetyltransf_7	Domain	223	281	1.1e-07	32.9	Acetyltransferase (GNAT) domain
`XP_057801839.1`	Pfam	`PF00583`	Acetyltransf_1	Family	68	187	1e-13	52.3	Acetyltransferase (GNAT) family
`XP_057801839.1`	Pfam	`PF13673`	Acetyltransf_10	Domain	128	192	2.5e-07	31.5	Acetyltransferase (GNAT) domain
`XP_057801839.1`	Pfam	`PF13508`	Acetyltransf_7	Domain	129	188	4.9e-08	34.0	Acetyltransferase (GNAT) domain
`XP_057801839.1`	Pfam	`PF08445`	FR47	Family	129	192	4.4e-10	40.1	FR47-like protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057945855.1
AAAGTCGTTGATTCTAATATGTGGAGTGGACCCATTGTGGGTAGAAAGTTAGAAACAGAAGCGGCTGCCGCCCAACCTCAGGTACTTTCTATTTCTGTGATTCTTTCTCAACACTACTTCCAATTTCCCTTTGATTCACTCCTCAATTCCTACTGATTGCCTTAAAATCCCGTTTCATTTTCTGATTGCTTCAATCCCGCAAGTAGCCGAACACAATTTTGAATCGGCTGAAGCTATTTTATCGCAATTTAATATTATCA...

XM_057945856.1
TTTCGTGGTGACATGGCATAAATATACTCGCTTGACATGAATACGCTTGTTTGACATAAATATGACCGTGTTAAAAAATAGAATTGACATCGTATTGTGTAGTTGGATTGAAATGACATCGTTTCATGCCCAAAGTTTGGTCAGAAAATGAGTAAATATGCAAATTGAGAAAAAAATCAATAGTTGAGTAATTTTAATAAAGATTTTAAAGTTCGTGTGCAAAATGAGAATTTGTTGAAAGTTTAGTTATATGCAATTAA...

CDS

2 records

下载 CDS FASTA

LOC131017078
ATGTATTTCATGGAGCTGAAGGGAAATTTCTTGCCGCAATTTAAAGTTCGTCAGACCCGTTTCGGATTGCATCCCTCAACCAAACACGAGGCTCTGCTAGTTGTCGCAATATTTACTGGGGAACCTCTTCCTCCTCGATACTATCGACAGAAGCATTTAGAAGTTCACTGTAATAAAGAAAAAAACACACAGAACTTGGCTCTTCCTAAGAATGAGATATCAAAGCTGCCTGAGCTCTACTTTGACCGACTGCAGCTTAC...

LOC131017078
ATGCGAAGGCGAGAATTTGGTCATTTTGTTGCTCGTAAAGCTATACTGGATGAAGAATATTGGACAGCAGCATGGCTCCGAGCAGAAGCCCATTGGGAATCCTTGTCTTATATGAGGCATGTTGATAGTTACAAAAGAAAGTATGCCGAGGAGGAGTTCTATGCTTTGAAGCGAAGATGTCATGGACAAGACGGGAAGTCATTGAACTGCTTCTGTTTTGTTGCAATTAAGAAAGAAGATAAAAATGTCCGGAGAACAGT...

Protein

2 records

下载 Protein FASTA

XP_057801838.1
MYFMELKGNFLPQFKVRQTRFGLHPSTKHEALLVVAIFTGEPLPPRYYRQKHLEVHCNKEKNTQNLALPKNEISKLPELYFDRLQLTDHECTGMRRREFGHFVARKAILDEEYWTAAWLRAEAHWESLSYMRHVDSYKRKYAEEEFYALKRRCHGQDGKSLNCFCFVAIKKEDKNVRRTVLNSIVGTLDLNIKQFRQGETHPGKSKKLSAVLAGQEPFDSRKYAYIANVCVAKFARRRGIASNMLYLAADVATTAGMKQL...

XP_057801839.1
MRRREFGHFVARKAILDEEYWTAAWLRAEAHWESLSYMRHVDSYKRKYAEEEFYALKRRCHGQDGKSLNCFCFVAIKKEDKNVRRTVLNSIVGTLDLNIKQFRQGETHPGKSKKLSAVLAGQEPFDSRKYAYIANVCVAKFARRRGIASNMLYLAADVATTAGMKQLFVHVNADNNPAQDLYKKIGFQVVEEASSSTSEDEKILMSMEL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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