Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001327`

染色体: Chr01 坐标: 26402990-26403655 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001327`
名称	SmilChr01G001327
描述	uncharacterized SmilChr01G001327
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	26402990 - 26403655 / `-`

ID 对照

NCBI Gene ID	`LOC131005247`
GeneID	`131005247`
locus_tag	`-`
NCBI Name	`LOC131005247`
原始查询	`SmilChr01G001327`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	C2H2 type zinc finger transcription factor family [Source:NCBI gene (formerly Entrezgene);Acc:835719]; symbol=AT5G56200; hit=AT5G56200; species=arabidopsis; confidence=low
产物	C2H2 type zinc finger transcription factor family [Source:NCBI gene (formerly Entrezgene);Acc:835719]; symbol=AT5G56200; hit=AT5G56200; species=arabidopsis; confidence=low
Arabidopsis	`AT5G56200` (AT5G56200) C2H2 type zinc finger transcription factor family [Source:NCBI gene (formerly Entrezgene);Acc:835719] identity=47.5; qcov=0.362; evalue=2.27e-13; confidence=low
Rice	`Os06g0727000` - identity=30.4; qcov=0.67; evalue=2.92e-12; confidence=low
GO	GO:0003700 (DNA-binding transcription factor activity)
KEGG	-
Pfam	PF00096 (zf-C2H2); PF13894 (zf-C2H2_4); PF13912 (zf-C2H2_6)
InterPro	-
eggNOG	-
NR	GeneID:131005247

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788106.1`
2	Chromosome	染色体	0.00000	`XP_057788106.1`
3	Centromere	着丝粒	0.00000	`XP_057788106.1`
4	Chromatin	染色质	0.00000	`XP_057788106.1`
5	Telomere	端粒	0.00000	`XP_057788106.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:26403063`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:26403103`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B121,B33,C45,C61
`Chr1:26403131`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B101,B27,B8,B94,D4
`Chr1:26403396`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,C75
`Chr1:26403404`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B27,B94
`Chr1:26403422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B77,B99
`Chr1:26403653`	`C`	`CAT`	2bp_insertion	frameshift_variant	3	A11,B7,C65
`Chr1:26403653`	`C`	`CAT`	2bp_insertion	CDS_variant	3	A11,B7,C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788106.1

221 aa

110

221

zf-C2H2_6

zf-C2H2

zf-C2H2_4

zf-C2H2_6

zf-C2H2

zf-C2H2_4

zf-C2H2_6

PF13912 zf-C2H2_6 15-39 aa PF00096 zf-C2H2 62-83 aa PF13894 zf-C2H2_4 62-83 aa PF13912 zf-C2H2_6 63-85 aa PF00096 zf-C2H2 151-173 aa PF13894 zf-C2H2_4 151-173 aa PF13912 zf-C2H2_6 151-173 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788106.1`	Pfam	`PF13912`	zf-C2H2_6	Domain	15	39	1.9e-22	79.4	C2H2-type zinc finger
`XP_057788106.1`	Pfam	`PF00096`	zf-C2H2	Domain	62	83	4.6e-09	36.9	Zinc finger, C2H2 type
`XP_057788106.1`	Pfam	`PF13894`	zf-C2H2_4	Domain	62	83	3.3e-14	52.9	C2H2-type zinc finger
`XP_057788106.1`	Pfam	`PF13912`	zf-C2H2_6	Domain	63	85	1.9e-22	79.4	C2H2-type zinc finger
`XP_057788106.1`	Pfam	`PF00096`	zf-C2H2	Domain	151	173	4.6e-09	36.9	Zinc finger, C2H2 type
`XP_057788106.1`	Pfam	`PF13894`	zf-C2H2_4	Domain	151	173	3.3e-14	52.9	C2H2-type zinc finger
`XP_057788106.1`	Pfam	`PF13912`	zf-C2H2_6	Domain	151	173	1.9e-22	79.4	C2H2-type zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932123.1
ATGGAGTCGATGATAATCAAACTCAAGATCCCAGGTGAAGCCCGTTTCGAGTGCCCGACTTGCTCCAAGTGTTTCAGCAGCGTCAAGGCTCTAGGTGGGCACAAATGGATTCACATGGAAAAGAAAAACAAGAGGAATCATCAAGTGATGGAGCTCCAAGGTGACGAAAATGGTGGTGACGTTTCTTGCCCCGTTTGCCACCAACCCTTCGCCTCCGACAAGTCCTTACACGGCCACATGAGGAAGCACCCCGAGCGGGG...

CDS

1 records

下载 CDS FASTA

LOC131005247
ATGGAGTCGATGATAATCAAACTCAAGATCCCAGGTGAAGCCCGTTTCGAGTGCCCGACTTGCTCCAAGTGTTTCAGCAGCGTCAAGGCTCTAGGTGGGCACAAATGGATTCACATGGAAAAGAAAAACAAGAGGAATCATCAAGTGATGGAGCTCCAAGGTGACGAAAATGGTGGTGACGTTTCTTGCCCCGTTTGCCACCAACCCTTCGCCTCCGACAAGTCCTTACACGGCCACATGAGGAAGCACCCCGAGCGGGG...

Protein

1 records

下载 Protein FASTA

XP_057788106.1
MESMIIKLKIPGEARFECPTCSKCFSSVKALGGHKWIHMEKKNKRNHQVMELQGDENGGDVSCPVCHQPFASDKSLHGHMRKHPERGWRGMMPPPPLDHEAASGACHLLALAGAQPPCLLQDKGKSVMGENSSLLATTFHHKTPLKSQNNYPCEICGKSFRSYQALGGHKSHHGRLSMEQPEGFAGISGHGQLPEDKGEEGNDDQPAKVVFDFDLNELPKW

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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