当前解析结果
SmilChr01G001337| 统一新 Gene ID | SmilChr01G001337 |
|---|---|
| 名称 | SmilChr01G001337 |
| 描述 | protein argonaute 4-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 26560405 - 26567016 / + |
| NCBI Gene ID | LOC131017167 |
|---|---|
| GeneID | 131017167 |
| locus_tag | - |
| NCBI Name | LOC131017167 |
| 原始查询 | SmilChr01G001337 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein argonaute 4-like |
| 产物 | protein argonaute 4-like |
| Arabidopsis | AT2G27040 (AGO4)Argonaute family protein [Source:NCBI gene (formerly Entrezgene);Acc:817246] identity=71.8; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0275600 (OsAGO4a)- identity=70; qcov=0.96; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0035194 (regulatory ncRNA-mediated post-transcriptional gene silencing) |
| KEGG | - |
| Pfam | PF02170 (PAZ); PF02171 (Piwi); PF08699 (ArgoL1); PF16486 (ArgoN); PF16487 (ArgoMid); PF16488 (ArgoL2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017167 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057801884.1 |
| 2 | Cytoplasmic granule | 细胞质颗粒 | 1.00000 | XP_057801884.1 |
| 3 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 1.00000 | XP_057801884.1 |
| 4 | Cytosol | 细胞质基质 | 0.80000 | XP_057801884.1 |
| 5 | P-body | P-body | 0.60000 | XP_057801884.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:26561792 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,B13,C18 |
Chr1:26561955 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B105,B12,C21 |
Chr1:26561963 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C86 |
Chr1:26561963 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C86 |
Chr1:26562073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,C59,C6 |
Chr1:26562281 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B8,B82 |
Chr1:26562393 |
G |
GAT |
2bp_insertion | frameshift_variant | 1 | C37 |
Chr1:26562393 |
G |
GAT |
2bp_insertion | CDS_variant | 1 | C37 |
Chr1:26562782 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C19,C82 |
Chr1:26563210 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B105,B12,C21,C37 |
Chr1:26563229 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr1:26563246 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B105,B12,C21,C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057801884.1PF16486
ArgoN 73-228 aa
PF08699
ArgoL1 240-289 aa
PF02170
PAZ 295-424 aa
PF16488
ArgoL2 434-479 aa
PF16487
ArgoMid 488-540 aa
PF02171
Piwi 578-884 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057801884.1 |
Pfam | PF16486 |
ArgoN | Domain | 73 | 228 | 7.4e-31 | 108.2 | N-terminal domain of argonaute |
XP_057801884.1 |
Pfam | PF08699 |
ArgoL1 | Domain | 240 | 289 | 1.1e-18 | 67.3 | Argonaute linker 1 domain |
XP_057801884.1 |
Pfam | PF02170 |
PAZ | Domain | 295 | 424 | 4.2e-31 | 108.2 | PAZ domain |
XP_057801884.1 |
Pfam | PF16488 |
ArgoL2 | Family | 434 | 479 | 1.6e-12 | 48.2 | Argonaute linker 2 domain |
XP_057801884.1 |
Pfam | PF16487 |
ArgoMid | Domain | 488 | 540 | 5.2e-07 | 30.5 | Mid domain of argonaute |
XP_057801884.1 |
Pfam | PF02171 |
Piwi | Domain | 578 | 884 | 1.9e-103 | 346.6 | Piwi domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。