Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001338`

染色体: Chr01 坐标: 26608457-26614485 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001338`
名称	SmilChr01G001338
描述	protein argonaute 4-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	26608457 - 26614485 / `+`

ID 对照

NCBI Gene ID	`LOC131017177`
GeneID	`131017177`
locus_tag	`-`
NCBI Name	`LOC131017177`
原始查询	`SmilChr01G001338`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein argonaute 4-like
产物	protein argonaute 4-like
Arabidopsis	`AT2G27040` (AGO4) Argonaute family protein [Source:NCBI gene (formerly Entrezgene);Acc:817246] identity=73.3; qcov=0.974; evalue=0; confidence=high
Rice	`Os04g0151800` (OsAGO4b) - identity=73; qcov=0.957; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0035194 (regulatory ncRNA-mediated post-transcriptional gene silencing)
KEGG	-
Pfam	PF02170 (PAZ); PF02171 (Piwi); PF08699 (ArgoL1); PF16486 (ArgoN); PF16487 (ArgoMid); PF16488 (ArgoL2)
InterPro	-
eggNOG	-
NR	GeneID:131017177

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057801896.1`
2	Cytoplasmic granule	细胞质颗粒	1.00000	`XP_057801896.1`
3	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.80000	`XP_057801896.1`
4	Nucleus	细胞核	0.40000	`XP_057801896.1`
5	P-body	P-body	0.40000	`XP_057801896.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:26608572`	`GT`	`G`	1bp_deletion	frameshift_variant	129	A13,A20,A21,A22,A24,A5,A7,A8,B1,B102,B104,B105,B107,B109,B11,B111,B112,B12,B122,B123,B124,B125,B129,B13,B130,B131,B136,B138,B139,B140,B19,B20,B23,B24,B25,B27,B31,B33,B34,B36,B37,B38,B39,B4,B41,B44,B46,B47,B48,B49,B5,B53,B54,B55,B56,B59,B6,B62,B63,B67,B68,B69,B74,B76,B77,B81,B83,B84,B85,B86,B88,B9,B90,B92,B95,B96,B99,C10,C12,C14,C16,C17,C18,C19,C2,C20,C21,C24,C26,C27,C28,C29,C30,C31,C35,C37,C41,C42,C43,C46,C47,C48,C49,C53,C57,C59,C6,C60,C64,C66,C67,C7,C73,C75,C77,C78,C79,C8,C81,C82,C86,C87,C9,D1,D10,D11,D2,D5,D6
`Chr1:26608575`	`T`	`TA`	1bp_insertion	stop_gained,frameshift_variant	129	A13,A20,A21,A22,A24,A5,A7,A8,B1,B102,B104,B105,B107,B109,B11,B111,B112,B12,B122,B123,B124,B125,B129,B13,B130,B131,B136,B138,B139,B140,B19,B20,B23,B24,B25,B27,B31,B33,B34,B36,B37,B38,B39,B4,B41,B44,B46,B47,B48,B49,B5,B53,B54,B55,B56,B59,B6,B62,B63,B67,B68,B69,B74,B76,B77,B81,B83,B84,B85,B86,B88,B9,B90,B92,B95,B96,B99,C10,C12,C14,C16,C17,C18,C19,C2,C20,C21,C24,C26,C27,C28,C29,C30,C31,C35,C37,C41,C42,C43,C46,C47,C48,C49,C53,C57,C59,C6,C60,C64,C66,C67,C7,C73,C75,C77,C78,C79,C8,C81,C82,C86,C87,C9,D1,D10,D11,D2,D5,D6
`Chr1:26608580`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr1:26608882`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr1:26608944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr1:26609112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B108,B17,C23,C75
`Chr1:26609702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B108,B17,C23,C75
`Chr1:26610052`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr1:26610288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr1:26610499`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B108,B17,C23,C75
`Chr1:26610732`	`AC`	`A`	1bp_deletion	frameshift_variant	122	A10,A15,A18,A2,A21,A22,A4,A5,A6,A7,B1,B10,B101,B103,B106,B108,B109,B111,B113,B117,B118,B120,B123,B125,B128,B13,B134,B135,B136,B14,B140,B15,B16,B17,B18,B19,B2,B23,B25,B28,B30,B31,B34,B35,B4,B45,B47,B48,B49,B50,B53,B54,B55,B56,B60,B65,B70,B71,B72,B73,B75,B76,B77,B79,B83,B87,B89,B9,B91,B93,B96,B98,C10,C11,C15,C18,C23,C24,C26,C27,C33,C34,C36,C38,C39,C40,C41,C43,C45,C47,C48,C50,C53,C55,C57,C58,C6,C62,C64,C65,C66,C69,C7,C71,C72,C75,C76,C78,C80,C83,C84,C85,C86,C87,D1,D10,D11,D2,D6,D7,D8,D9
`Chr1:26611083`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057801896.1

909 aa

454

909

ArgoN

ArgoL1

PAZ

ArgoL2

ArgoMid

Piwi

PF16486 ArgoN 55-215 aa PF08699 ArgoL1 227-276 aa PF02170 PAZ 282-409 aa PF16488 ArgoL2 419-464 aa PF16487 ArgoMid 474-526 aa PF02171 Piwi 563-869 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057801896.1`	Pfam	`PF16486`	ArgoN	Domain	55	215	6.9e-30	105.0	N-terminal domain of argonaute
`XP_057801896.1`	Pfam	`PF08699`	ArgoL1	Domain	227	276	5.2e-19	68.3	Argonaute linker 1 domain
`XP_057801896.1`	Pfam	`PF02170`	PAZ	Domain	282	409	9.5e-32	110.3	PAZ domain
`XP_057801896.1`	Pfam	`PF16488`	ArgoL2	Family	419	464	2.1e-14	54.1	Argonaute linker 2 domain
`XP_057801896.1`	Pfam	`PF16487`	ArgoMid	Domain	474	526	1.6e-07	32.2	Mid domain of argonaute
`XP_057801896.1`	Pfam	`PF02171`	Piwi	Domain	563	869	5.3e-104	348.4	Piwi domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057945913.1
ATGGATCCATCTGAGCATGATGGAAATGGGGCCTCAGAAGCTCTTCCTCCTCCACCTCCCGTTCCTCCAAATGTGACTCCTATAAAAGTTGTTACCGAACCAGAAGTGAAAAAAGTTTATCGGGCTCCAATGGCTAGACGTGGGTTTGGAACTAGAGGAAACAAAGTTCCTATCCTAACCAACCACTTCAAAGTGAATGTGAATAATGTTGATGGGCACTTCTTTCATTATAGTGTTGCCCTTTTCTATGAAGATGGCCG...

CDS

1 records

下载 CDS FASTA

LOC131017177
ATGGATCCATCTGAGCATGATGGAAATGGGGCCTCAGAAGCTCTTCCTCCTCCACCTCCCGTTCCTCCAAATGTGACTCCTATAAAAGTTGTTACCGAACCAGAAGTGAAAAAAGTTTATCGGGCTCCAATGGCTAGACGTGGGTTTGGAACTAGAGGAAACAAAGTTCCTATCCTAACCAACCACTTCAAAGTGAATGTGAATAATGTTGATGGGCACTTCTTTCATTATAGTGTTGCCCTTTTCTATGAAGATGGCCG...

Protein

1 records

下载 Protein FASTA

XP_057801896.1
MDPSEHDGNGASEALPPPPPVPPNVTPIKVVTEPEVKKVYRAPMARRGFGTRGNKVPILTNHFKVNVNNVDGHFFHYSVALFYEDGRPVDGKGVGRKVLDRVRDTYDSELAGKEFAYDGEKSLFTVGSLPRNKLEFTVVLEDVTSSRNNGNSSPGGKGSPNESDKKRLRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSMEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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