Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001345`

染色体: Chr01 坐标: 26705568-26708801 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001345`
名称	SmilChr01G001345
描述	ubiquitin-like-specific protease 2
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	26705568 - 26708801 / `+`

ID 对照

NCBI Gene ID	`LOC131017326`
GeneID	`131017326`
locus_tag	`-`
NCBI Name	`LOC131017326`
原始查询	`SmilChr01G001345`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin-like-specific protease 2
产物	ubiquitin-like-specific protease 2
Arabidopsis	`AT3G48480` (AT3G48480) Cysteine proteinases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824007] identity=43.1; qcov=0.703; evalue=4.7e-58; confidence=medium
Rice	`Os11g0214001` - identity=40.1; qcov=0.691; evalue=3.46e-51; confidence=medium
GO	GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity)
KEGG	-
Pfam	PF02902 (Peptidase_C48)
InterPro	-
eggNOG	-
NR	GeneID:131017326

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802036.1`
2	Chromosome	染色体	0.00000	`XP_057802036.1`
3	Centromere	着丝粒	0.00000	`XP_057802036.1`
4	Chromatin	染色质	0.00000	`XP_057802036.1`
5	Telomere	端粒	0.00000	`XP_057802036.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:26705856`	`C`	`CT`	1bp_insertion	frameshift_variant	33	A10,B103,B105,B106,B118,B124,B13,B133,B134,B140,B18,B49,B53,B63,B66,B70,B77,B80,B87,B91,B93,B99,C12,C18,C29,C39,C4,C49,C61,C7,C73,C79,D3
`Chr1:26705890`	`G`	`GTT`	2bp_insertion	frameshift_variant	22	B1,B112,B115,B12,B128,B138,B24,B44,B51,B69,B74,B86,C14,C28,C3,C37,C58,C62,C72,C84,D6,D8
`Chr1:26705903`	`T`	`TTC`	2bp_insertion	frameshift_variant	2	C56,C60
`Chr1:26705903`	`T`	`TTC`	2bp_insertion	CDS_variant	2	C56,C60
`Chr1:26707162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr1:26707190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr1:26707232`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B48,D2
`Chr1:26707255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,B66
`Chr1:26707705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:26707723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,B124
`Chr1:26708034`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr1:26708325`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802036.1

366 aa

183

366

Peptidase_C48

PF02902 Peptidase_C48 164-300 aa

XP_057802042.1

343 aa

172

343

Peptidase_C48

PF02902 Peptidase_C48 164-297 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802036.1`	Pfam	`PF02902`	Peptidase_C48	Domain	164	300	8.2e-13	49.4	Ulp1 protease family, C-terminal catalytic domain
`XP_057802042.1`	Pfam	`PF02902`	Peptidase_C48	Domain	164	297	7.4e-13	49.5	Ulp1 protease family, C-terminal catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946053.1
ATTTAAATTTCGCATCATCTTCTCCGTATCATAGTTATGGTGGAGGATGAAGTACTTTGTTTTTTTTTTTGGAAAGGTAGATGAGTATTTTTTTTAGAAACACCACACCTAGTTGTCTTCCTTTGTACGCAAACGCAACACATGAGTTTATTACTACACAGAGATAGATAGATATGCAATTATGAGAATTCAAGAACTCAGAACTCGCAGCCTTCGAAAAGGGTTCTAATTGATCGACCTCAAACTCCCCAATTCCTGAA...

XM_057946059.1
ATCTTCTCCGTATCATAGTTATGGTGGAGGATGAAGTACTTTGTTTTTTTTTTTGGAAAGGTAGATGAGTATTTTTTTTAGAAACACCACACCTAGTTGTCTTCCTTTGTACGCAAACGCAACACATGAGTTTATTACTACACAGAGATAGATAGATATGCAATTATGAGAATTCAAGAACTCAGAACTCGCAGCCTTCGAAAAGGGTTCTAATTGATCGACCTCAAACTCCCCAATTCCTGAATCCAAAACGCATGACC...

CDS

2 records

下载 CDS FASTA

LOC131017326
ATGACCCCCATCCCACCTCTATTCAAAACCCGGATTGACGCCATTGCTTTTTGTTTTTTTTTTTTTCACTCCTTCCCACTATTTTCTTCGAAATTTCTTCCGCTTTCTTCTTTTCTTTCTCCTTTTGTAATGTCAGTGAATCTTGGAAACACAAAGGGTTCTGCTGGGAGCGAGAGCACCGATCAAGAAAATGGAGTCTCCAAGGTAGCACGCCCAAGCCCAAAGGGTCGCAAGCGAAAGAGTAAATTAAAACAAGATGA...

Protein

2 records

下载 Protein FASTA

XP_057802036.1
MTPIPPLFKTRIDAIAFCFFFFHSFPLFSSKFLPLSSFLSPFVMSVNLGNTKGSAGSESTDQENGVSKVARPSPKGRKRKSKLKQDELSVSEVTVPRHTRRRGHVRGSRSNSGRITTERGKLDTGRFHHYLMHMWDEFPKEKVESATYFDPLWFDMYANQNRKANVLSWIKEKGIFSKKYVLVPIVMWSHWSLLIFCNLGQRLDSETNAPCMLLLDSLQAVDSKRLEPSIRRLLIDIYMSEERTESEKELLKIPLSIPDV...

XP_057802042.1
MTPIPPLFKTRIDAIAFCFFFFHSFPLFSSKFLPLSSFLSPFVMSVNLGNTKGSAGSESTDQENGVSKVARPSPKGRKRKSKLKQDELSVSEVTVPRHTRRRGHVRGSRSNSGRITTERGKLDTGRFHHYLMHMWDEFPKEKVESATYFDPLWFDMYANQNRKANVLSWIKEKGIFSKKYVLVPIVMWSHWSLLIFCNLGQRLDSETNAPCMLLLDSLQAVDSKRLEPSIRRLLIDIYMSEERTESEKELLKIPLSIPDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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