Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001352`

染色体: Chr01 坐标: 26794181-26798599 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001352`
名称	SmilChr01G001352
描述	uncharacterized SmilChr01G001352
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	26794181 - 26798599 / `-`

ID 对照

NCBI Gene ID	`LOC131017431`
GeneID	`131017431`
locus_tag	`-`
NCBI Name	`LOC131017431`
原始查询	`SmilChr01G001352`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ubiquitin-associated/translation elongation factor EF1B protein [Source:NCBI gene (formerly Entrezgene);Acc:817233]; symbol=AT2G26920; hit=AT2G26920; species=arabidopsis; confidence=high
产物	Ubiquitin-associated/translation elongation factor EF1B protein [Source:NCBI gene (formerly Entrezgene);Acc:817233]; symbol=AT2G26920; hit=AT2G26920; species=arabidopsis; confidence=high
Arabidopsis	`AT2G26920` (AT2G26920) Ubiquitin-associated/translation elongation factor EF1B protein [Source:NCBI gene (formerly Entrezgene);Acc:817233] identity=47.8; qcov=1.06; evalue=3.33e-162; confidence=high
Rice	`Os05g0409000` - identity=48; qcov=0.901; evalue=2.19e-119; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF22562 (UBA_7)
InterPro	-
eggNOG	-
NR	GeneID:131017431

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057802165.1`
2	Cytosol	细胞质基质	0.80000	`XP_057802165.1`
3	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057802165.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057802165.1`
5	Nucleus	细胞核	0.00000	`XP_057802165.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:26794394`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr1:26794414`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr1:26794422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,B60
`Chr1:26794434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B105,B74,C21,C28
`Chr1:26794512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr1:26794700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr1:26794781`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,C46
`Chr1:26795534`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr1:26795972`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802165.1

638 aa

319

638

UBA_7

PF22562 UBA_7 161-200 aa

XP_057802170.1

638 aa

319

638

UBA_7

PF22562 UBA_7 161-200 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802165.1`	Pfam	`PF22562`	UBA_7	Domain	161	200	1.1e-07	32.4	UBA-like domain
`XP_057802170.1`	Pfam	`PF22562`	UBA_7	Domain	161	200	1.1e-07	32.4	UBA-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946182.1
GCATTCAACTACCACAGCTCGTATGTGGAGACTCAGTGAACCAAGCTGTTGCTGGTTGTACCTTCTCACCCAGTGGGTAGATATGTAAGGATGTACAACTCAAAGCGGTAGGTGTAGAGAGTGCGGCCACACTGAAAACTTCCCACTCCCATGATGTGTACGTGGCCGTCCGGATGTTTTCTTATTACTACGTTTTTCTTGAAGAAAAAAGGAAAAAGAAAACCCTAATCCCGGCTTGATTCAGTTTCATTTTTCAGCCT...

XM_057946187.1
GTGATCGATAGAGATGGCTAGGGTTGGGAGGGGCGTTGCATTTCTTCTTCATTCTTTCTATTTTCAAAGCTATTCAATGTGAATTTTATTTATAGCAAGGGCTCTGAATGGGAGGAATTATCTGGGAGCTTCGATTTTGTCGATTTCTCTTCGGGGCGGGTTTTGGTAGCTCAATAGTTTTTTACCCCTGGCAGTCGATGCGTTAGAATTTTGGATTGATTGATCTGCATGTGGCCTTGGGAGTGGATGCAGGGCGGGTT...

CDS

2 records

下载 CDS FASTA

LOC131017431
ATGTCTCCAGCATCTAGATCTAAATCCAAAGACAAAAAAGCTGGCAAGGAACCTCCAAAGGGTTCTTCAAAGCCTTCAGGACATGTCAGCACCAGTGGTGGGATCCCATCAAGTGGTTACAATCCTCTATTGGGAACGTTCCATACATTTGAGGCTCCACCAGTGCCTTCTACTAGTCCACTTCATGTTAATGGCCGTTTTCGTAACATAGACGATACAGATGATCAGAACGGGAATACATTTGGGACTGGCGTTGAGTA...

Protein

2 records

下载 Protein FASTA

XP_057802165.1
MSPASRSKSKDKKAGKEPPKGSSKPSGHVSTSGGIPSSGYNPLLGTFHTFEAPPVPSTSPLHVNGRFRNIDDTDDQNGNTFGTGVEYDSVSNNGSWSGESEDHKDKAAQPTSRQDSVPGADNDKREKIRQKNERKHQRQKERRAQELHERCSGYLMSRKLEALAQQLVSMGFSQERATMALILNEGRVEESVAWLFEGGEEDKRMEHNLDGGGNLKIDISEELARISDMELRYKASKQEVERAIVTFEGDLEKAEEMLKT...

XP_057802170.1
MSPASRSKSKDKKAGKEPPKGSSKPSGHVSTSGGIPSSGYNPLLGTFHTFEAPPVPSTSPLHVNGRFRNIDDTDDQNGNTFGTGVEYDSVSNNGSWSGESEDHKDKAAQPTSRQDSVPGADNDKREKIRQKNERKHQRQKERRAQELHERCSGYLMSRKLEALAQQLVSMGFSQERATMALILNEGRVEESVAWLFEGGEEDKRMEHNLDGGGNLKIDISEELARISDMELRYKASKQEVERAIVTFEGDLEKAEEMLKT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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