Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001364`

染色体: Chr01 坐标: 27012110-27014449 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001364`
名称	SmilChr01G001364
描述	G2/mitotic-specific cyclin S13-7-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	27012110 - 27014449 / `+`

ID 对照

NCBI Gene ID	`LOC131017529`
GeneID	`131017529`
locus_tag	`-`
NCBI Name	`LOC131017529`
原始查询	`SmilChr01G001364`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G2/mitotic-specific cyclin S13-7-like
产物	G2/mitotic-specific cyclin S13-7-like
Arabidopsis	`AT2G26760` (CYCB1;4) Cyclin B1;4 [Source:NCBI gene (formerly Entrezgene);Acc:817217] identity=52.1; qcov=0.966; evalue=3.95e-140; confidence=high
Rice	`Os01g0805600` (CycB1) - identity=48.7; qcov=1.04; evalue=1.34e-122; confidence=high
GO	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005813 (centrosome); GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity); GO:0044772 (mitotic cell cycle phase transition)
KEGG	-
Pfam	PF00134 (Cyclin_N); PF02984 (Cyclin_C)
InterPro	-
eggNOG	-
NR	GeneID:131017529

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802300.1`
2	Nucleoplasm	核质	0.20000	`XP_057802300.1`
3	Chromosome	染色体	0.00000	`XP_057802300.1`
4	Centromere	着丝粒	0.00000	`XP_057802300.1`
5	Chromatin	染色质	0.00000	`XP_057802300.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:27012418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:27012615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B5,B63
`Chr1:27012623`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B120,C76,C87,C9
`Chr1:27012994`	`A`	`AC`	1bp_insertion	frameshift_variant	47	A16,A4,A7,B100,B114,B115,B119,B120,B130,B132,B133,B32,B42,B43,B45,B58,B59,B6,B60,B67,B69,B73,B75,B78,B84,B95,C14,C20,C22,C23,C29,C32,C34,C41,C42,C44,C49,C5,C51,C54,C56,C60,C63,C68,C84,D11,D3
`Chr1:27013078`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B105,C21,D11
`Chr1:27013701`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:27013735`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr1:27013803`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C37,C44
`Chr1:27013935`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:27014033`	`C`	`CGG`	2bp_insertion	frameshift_variant	1	B122
`Chr1:27014033`	`C`	`CGG`	2bp_insertion	CDS_variant	1	B122
`Chr1:27014041`	`C`	`CT`	1bp_insertion	stop_gained,frameshift_variant	3	A5,C31,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802300.1

416 aa

208

416

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 162-287 aa PF02984 Cyclin_C 289-407 aa

XP_057802307.1

415 aa

208

415

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 161-286 aa PF02984 Cyclin_C 288-406 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802300.1`	Pfam	`PF00134`	Cyclin_N	Domain	162	287	5.9e-47	159.3	Cyclin, N-terminal domain
`XP_057802300.1`	Pfam	`PF02984`	Cyclin_C	Domain	289	407	5.1e-33	114.3	Cyclin, C-terminal domain
`XP_057802307.1`	Pfam	`PF00134`	Cyclin_N	Domain	161	286	5.9e-47	159.3	Cyclin, N-terminal domain
`XP_057802307.1`	Pfam	`PF02984`	Cyclin_C	Domain	288	406	5.1e-33	114.3	Cyclin, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946317.1
AACGGCTAGTTAGTCAATATGCACACAATCTCACGACCACAAACCGAATCTCAACCGTCCGATCACCCACAATCCAACGGATCCTATTCAAAGATGCAGAATATGACCGTTAATATTGGAGAGGCGTCTCTCCACTCGGAAGTAATAACACACTCTTCTTCATCATCATTGTCAGAAAAGTAGATATACAAAGACACGAAAAAACGATTCTTGCGAGACAAACAAGGCATTCTAGAGAGAGAAGCTGTGAATTGCAGTAA...

XM_057946324.1
AACACACTCTTCTTCATCATCATTGTCAGAAAAGTAGATATACAAAGACACGAAAAAACGATTCTTGCGAGACAAACAAGGCATTCTAGAGAGAGAAGCTGTGAATTGCAGTAATCAGAAACTTGGAAGAGATGGCTTCTACAACTGTTGTTCCAGAGCAACCGAGGGGAGGAGGGAAGCAGAAGATTGTAGACAGAAATAGGCGAGTCCTAAAAGATATTGGAAATTTGGTTACTGCACAAGCTGTTGAGCGCAAGCCC...

CDS

2 records

下载 CDS FASTA

LOC131017529
ATGGCTTCTACAACTGTTGTTCCAGAGCAACCGAGGGTAGGAGGAGGGAAGCAGAAGATTGTAGACAGAAATAGGCGAGTCCTAAAAGATATTGGAAATTTGGTTACTGCACAAGCTGTTGAGCGCAAGCCCCATACTCAAATCACTCGCCCTGTAACCAGGAGTTTTGGGGCACAGGTGTTGGCAAATGCACAAGCAGCAGCAGAGAAAAACATATGCAAGAAGCCATTGGTGGAAAGTGGAAACGATTTGGTTGCTAA...

LOC131017529
ATGGCTTCTACAACTGTTGTTCCAGAGCAACCGAGGGGAGGAGGGAAGCAGAAGATTGTAGACAGAAATAGGCGAGTCCTAAAAGATATTGGAAATTTGGTTACTGCACAAGCTGTTGAGCGCAAGCCCCATACTCAAATCACTCGCCCTGTAACCAGGAGTTTTGGGGCACAGGTGTTGGCAAATGCACAAGCAGCAGCAGAGAAAAACATATGCAAGAAGCCATTGGTGGAAAGTGGAAACGATTTGGTTGCTAAACC...

Protein

2 records

下载 Protein FASTA

XP_057802300.1
MASTTVVPEQPRVGGGKQKIVDRNRRVLKDIGNLVTAQAVERKPHTQITRPVTRSFGAQVLANAQAAAEKNICKKPLVESGNDLVAKPKASKKEAVIVISSDEGESCESGRKARGRSSKKPCKAFTSILSARSKAAACEDVVVDIDAEDADNELAAPEYVEDMYNFYKLTEGDGRVDDYMGSQPEINSKMRGILVDWLIEVHRKFELTPESLYLTVNIVDRFLSRKAVPRRELQLVGISSMLIACKYEEIWAPEVSELVA...

XP_057802307.1
MASTTVVPEQPRGGGKQKIVDRNRRVLKDIGNLVTAQAVERKPHTQITRPVTRSFGAQVLANAQAAAEKNICKKPLVESGNDLVAKPKASKKEAVIVISSDEGESCESGRKARGRSSKKPCKAFTSILSARSKAAACEDVVVDIDAEDADNELAAPEYVEDMYNFYKLTEGDGRVDDYMGSQPEINSKMRGILVDWLIEVHRKFELTPESLYLTVNIVDRFLSRKAVPRRELQLVGISSMLIACKYEEIWAPEVSELVAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器