Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001365`

染色体: Chr01 坐标: 27023423-27025072 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001365`
名称	SmilChr01G001365
描述	replication protein A 70 kDa DNA-binding subunit D-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	27023423 - 27025072 / `+`

ID 对照

NCBI Gene ID	`LOC131005352`
GeneID	`131005352`
locus_tag	`-`
NCBI Name	`LOC131005352`
原始查询	`SmilChr01G001365`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	replication protein A 70 kDa DNA-binding subunit D-like
产物	replication protein A 70 kDa DNA-binding subunit D-like
Arabidopsis	`AT2G05642` (AT2G05642) Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819430] identity=35.1; qcov=0.409; evalue=4.72e-08; confidence=low
Rice	`Os07g0113000` - identity=27.6; qcov=0.552; evalue=8.23e-07; confidence=low
GO	-
KEGG	-
Pfam	PF02721 (DUF223); PF16900 (REPA_OB_2)
InterPro	-
eggNOG	-
NR	GeneID:131005352

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788261.1`
2	Chromosome	染色体	0.60000	`XP_057788261.1`
3	Telomere	端粒	0.40000	`XP_057788261.1`
4	Centromere	着丝粒	0.00000	`XP_057788261.1`
5	Chromatin	染色质	0.00000	`XP_057788261.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:27023450`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr1:27023487`	`T`	`TA`	1bp_insertion	frameshift_variant	14	A1,A19,A20,A5,B10,B129,B139,B19,B43,B65,B73,B8,C13,C52
`Chr1:27023509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B39,B54,B76,C29
`Chr1:27023515`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A3,B55,C26
`Chr1:27023526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr1:27023534`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C9
`Chr1:27023534`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr1:27023563`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C34,D7
`Chr1:27023565`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C34,D7
`Chr1:27023569`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B115,B122,C61
`Chr1:27023810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B51,C74
`Chr1:27023834`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788261.1

230 aa

115

230

DUF223

REPA_OB_2

PF02721 DUF223 18-120 aa PF16900 REPA_OB_2 132-221 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788261.1`	Pfam	`PF02721`	DUF223	Domain	18	120	4.3e-16	59.9	Domain of unknown function DUF223
`XP_057788261.1`	Pfam	`PF16900`	REPA_OB_2	Domain	132	221	1.7e-07	31.8	Replication protein A OB domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932278.1
CTGTTTTGTTCTCAACGAAGGAAATGACGACAAGGAATGGAATCATTCAAATCAACTCCATCGATAAAAAAACTTGGAATAAAAGGGTCGTCGTTAGAATATTGCGGCTTTGGGTTCAAAAGGATTTAACAGGCCGAGAAGGCTTGGAGATGATTTTAATCGATGAATGGGGCAATCAAATTCAAGCATCTGTCTCTTTTGGAAATAAAAGGAAGTTTATGCCTATTTTGAGAGAGGGAGATATAAATACGATCCAAAAT...

CDS

1 records

下载 CDS FASTA

LOC131005352
ATGACGACAAGGAATGGAATCATTCAAATCAACTCCATCGATAAAAAAACTTGGAATAAAAGGGTCGTCGTTAGAATATTGCGGCTTTGGGTTCAAAAGGATTTAACAGGCCGAGAAGGCTTGGAGATGATTTTAATCGATGAATGGGGCAATCAAATTCAAGCATCTGTCTCTTTTGGAAATAAAAGGAAGTTTATGCCTATTTTGAGAGAGGGAGATATAAATACGATCCAAAATTTCCAAGTAATGGACAACAAACC...

Protein

1 records

下载 Protein FASTA

XP_057788261.1
MTTRNGIIQINSIDKKTWNKRVVVRILRLWVQKDLTGREGLEMILIDEWGNQIQASVSFGNKRKFMPILREGDINTIQNFQVMDNKPNFQMAKVDHLYMLGFGLATQIEQPDEGFEILENGFNFIPFTDIPTHDPTFFLDVLGEVMTHTINIDWVEMRTGKASKCDITLADADGTQVTCVLWGSLAEELKTFMENKSAEDKELVMVALQFAKISTFRGLIIMTKHKHSYI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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