Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001388`

染色体: Chr01 坐标: 27283075-27289959 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001388`
名称	SmilChr01G001388
描述	wall-associated receptor kinase-like 10
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	27283075 - 27289959 / `-`

ID 对照

NCBI Gene ID	`LOC131017730`
GeneID	`131017730`
locus_tag	`-`
NCBI Name	`LOC131017730`
原始查询	`SmilChr01G001388`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	wall-associated receptor kinase-like 10
产物	wall-associated receptor kinase-like 10
Arabidopsis	`AT1G69730` (AT1G69730) Wall-associated kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843309] identity=42; qcov=0.702; evalue=6.33e-160; confidence=medium
Rice	`Os04g0598900` (OsWAK50) - identity=41.5; qcov=0.673; evalue=5.52e-154; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF07645 (EGF_CA); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind)
InterPro	-
eggNOG	-
NR	GeneID:131017730

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802432.1`
2	Nucleus	细胞核	0.00000	`XP_057802432.1`
3	Chromosome	染色体	0.00000	`XP_057802432.1`
4	Centromere	着丝粒	0.00000	`XP_057802432.1`
5	Chromatin	染色质	0.00000	`XP_057802432.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:27283350`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C10,C79
`Chr1:27283354`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B6,C67
`Chr1:27283368`	`ACT`	`A`	2bp_deletion	frameshift_variant	1	C83
`Chr1:27283368`	`ACT`	`A`	2bp_deletion	CDS_variant	1	C83
`Chr1:27283481`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D9
`Chr1:27283561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B41,B77,B99,C46
`Chr1:27283575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr1:27283664`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B41,B77,B99,C46,D10
`Chr1:27283825`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B120,B138,C76
`Chr1:27284117`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B41,B77,B99,C46
`Chr1:27284348`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C10,C79
`Chr1:27284362`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802432.1

1039 aa

520

1039

GUB_WAK_bind

EGF_CA

Pkinase

PK_Tyr_Ser-Thr

PF13947 GUB_WAK_bind 31-84 aa PF13947 GUB_WAK_bind 320-362 aa PF07645 EGF_CA 602-646 aa PF00069 Pkinase 730-997 aa PF07714 PK_Tyr_Ser-Thr 733-1000 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802432.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	31	84	1.7e-17	64.2	Wall-associated receptor kinase galacturonan-binding
`XP_057802432.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	320	362	1.7e-17	64.2	Wall-associated receptor kinase galacturonan-binding
`XP_057802432.1`	Pfam	`PF07645`	EGF_CA	Domain	602	646	5.8e-11	43.2	Calcium-binding EGF domain
`XP_057802432.1`	Pfam	`PF00069`	Pkinase	Domain	730	997	4.3e-50	171.3	Protein kinase domain
`XP_057802432.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	733	1000	1.9e-49	169.0	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946449.1
TTGAATCTTTTTCATTAATTTTCTGAAACAAGATTCATTTATGAAACCCAACTTGCTTCCAGTATTCAAATTGACTTTTTAGACAATGTCCACTTGTTTTTAGTTATAGACATAAATAAGTTAATTAAGGCTTTTTCTGAAACATACCCATTATGCCTGGACACCCAGTTTCCATCTTGCATTTCGTCTTTGTCGCCCTTGTTTCACCATCAATTTCTGGTGGCCTAATTGCGAAAAGTGGGTGTGAAGAGAAGTGTGGG...

CDS

1 records

下载 CDS FASTA

LOC131017730
ATGCCTGGACACCCAGTTTCCATCTTGCATTTCGTCTTTGTCGCCCTTGTTTCACCATCAATTTCTGGTGGCCTAATTGCGAAAAGTGGGTGTGAAGAGAAGTGTGGGGATTTAGTGATTCCATATCCATTCGGAGTCGGGTCGAACTGCTCGTTCGACCCGTCCTTCGACATCAGCTGCAACACTTCCACCACCCCTCCGAAGGCGTACCTCTCCATCATCGGCAAACAAGTTATCGAAATAAATGAGACCTATGTTCG...

Protein

1 records

下载 Protein FASTA

XP_057802432.1
MPGHPVSILHFVFVALVSPSISGGLIAKSGCEEKCGDLVIPYPFGVGSNCSFDPSFDISCNTSTTPPKAYLSIIGKQVIEINETYVRVKYPNLVSVCYQGENATRESATLNLTGTLYALSMYTNRLTAIGCDDAVLQFNGTSTNGGCSAFCEDQTETAGVGYCPFDPTSLGHGCCQAQIVGDTGIVGAELIDLSIRVQRRRIFPCSFAFIQEVSDTNETGFQYPFEYLHNSTALQNDNWASATSPPVVRLDWIPGSASCS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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