Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001391`

染色体: Chr01 坐标: 27347996-27358106 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001391`
名称	SmilChr01G001391
描述	uncharacterized SmilChr01G001391
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	27347996 - 27358106 / `-`

ID 对照

NCBI Gene ID	`LOC131017755`
GeneID	`131017755`
locus_tag	`-`
NCBI Name	`LOC131017755`
原始查询	`SmilChr01G001391`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841558]; symbol=AT1G51350; hit=AT1G51350; species=arabidopsis; confidence=high
产物	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841558]; symbol=AT1G51350; hit=AT1G51350; species=arabidopsis; confidence=high
Arabidopsis	`AT1G51350` (AT1G51350) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841558] identity=54.4; qcov=0.957; evalue=0; confidence=high
Rice	`Os11g0638900` - identity=56.1; qcov=0.115; evalue=2.64e-14; confidence=weak
GO	GO:0005515 (protein binding); GO:0034657 (GID complex); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
KEGG	-
Pfam	PF00514 (Arm); PF30130 (VID28_C)
InterPro	-
eggNOG	-
NR	GeneID:131017755

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057802454.1`
2	Nucleus	细胞核	0.60000	`XP_057802454.1`
3	Cytosol	细胞质基质	0.60000	`XP_057802454.1`
4	Chromosome	染色体	0.00000	`XP_057802454.1`
5	Centromere	着丝粒	0.00000	`XP_057802454.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:27350459`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B132,B33,B42,B43
`Chr1:27354575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:27356326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,B22,B7,C47
`Chr1:27356390`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr1:27357606`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B29
`Chr1:27357678`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B77,B99
`Chr1:27357734`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:27357800`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802454.1

669 aa

334

669

Arm

VID28_C

Arm

PF00514 Arm 449-479 aa PF30130 VID28_C 459-528 aa PF00514 Arm 591-616 aa

XP_057802463.1

575 aa

288

575

Arm

VID28_C

PF00514 Arm 449-479 aa PF30130 VID28_C 459-528 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802454.1`	Pfam	`PF00514`	Arm	Repeat	449	479	9.6e-23	80.1	Armadillo/beta-catenin-like repeat
`XP_057802454.1`	Pfam	`PF30130`	VID28_C	Repeat	459	528	5.7e-08	32.7	VID28/GID5 C-terminal domain
`XP_057802454.1`	Pfam	`PF00514`	Arm	Repeat	591	616	9.6e-23	80.1	Armadillo/beta-catenin-like repeat
`XP_057802463.1`	Pfam	`PF00514`	Arm	Repeat	449	479	2.1e-16	60.0	Armadillo/beta-catenin-like repeat
`XP_057802463.1`	Pfam	`PF30130`	VID28_C	Repeat	459	528	5.7e-07	29.4	VID28/GID5 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946471.1
CACTCAATTTCAAATCCCAAGCAAAAGCAATATAGAAAAAACACGCACTGTATAAAACGAACCAAAGAAAATAATCAATCATCTCTGCCCAAACACAATCACACACCACAATCACCGCACCTCCTCCGCCACCGCTGCAGCCGCCGTCGCCGCTCCGGGTCGCATTCCTCCGGCGGGGTCAGATTTCAAACTTCCATCCCCTCGGTGAATTTTCCATCCGCGGCGATGCCGGCCTCCGTGGCTTCGAGTAATTCCAGCCG...

XM_057946480.1
AAGCAATATAGAAAAAACACGCACTGTATAAAACGAACCAAAGAAAATAATCAATCATCTCTGCCCAAACACAATCACACACCACAATCACCGCACCTCCTCCGCCACCGCTGCAGCCGCCGTCGCCGCTCCGGGTCGCATTCCTCCGGCGGGGTCAGATTTCAAACTTCCATCCCCTCGGTGAATTTTCCATCCGCGGCGATGCCGGCCTCCGTGGCTTCGAGTAATTCCAGCCGCCCGGAGGACTTGATCGGAAGGCT...

CDS

2 records

下载 CDS FASTA

LOC131017755
ATGCCGGCCTCCGTGGCTTCGAGTAATTCCAGCCGCCCGGAGGACTTGATCGGAAGGCTGAGCTTACCGCAGGCACCATACGAGGCTAAGCTGAAAGCTCTGAGGGACTTGAAGAACCAGATAATTGGAAATCGCACAAAAAAGCTGGCCTTCCTGAAGCTCGGCGCCGTGCCTTCTATTGTCGCTATTCTGGCCTCCTCTGCCGCCGCCTCAGGCGGCGGAGGGGACTGCCGTGACTTCCATGAGTCGTTTTTGATCCA...

Protein

2 records

下载 Protein FASTA

XP_057802454.1
MPASVASSNSSRPEDLIGRLSLPQAPYEAKLKALRDLKNQIIGNRTKKLAFLKLGAVPSIVAILASSAAASGGGGDCRDFHESFLIQSAAAIGSFACGLDTGVKAVLDAGAFPILFSLISHPNQKVVDASARALKMIYQSKLAPNYDFLQEKNMEFLLSLLNGENENVTGLGASIITHSCQTTVEQQVLSEAGVIKRLVGLLGGSLIQRDASLESLAAVIKNNPEVASRFIVPENGRELSIVIELMKDKCPRTRLLACMC...

XP_057802463.1
MPASVASSNSSRPEDLIGRLSLPQAPYEAKLKALRDLKNQIIGNRTKKLAFLKLGAVPSIVAILASSAAASGGGGDCRDFHESFLIQSAAAIGSFACGLDTGVKAVLDAGAFPILFSLISHPNQKVVDASARALKMIYQSKLAPNYDFLQEKNMEFLLSLLNGENENVTGLGASIITHSCQTTVEQQVLSEAGVIKRLVGLLGGSLIQRDASLESLAAVIKNNPEVASRFIVPENGRELSIVIELMKDKCPRTRLLACMC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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