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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G001403

染色体: Chr01 坐标: 27628802-27639329 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G001403
名称SmilChr01G001403
描述pre-mRNA-processing protein 40A-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向27628802 - 27639329 / -

ID 对照

NCBI Gene IDLOC131017802
GeneID131017802
locus_tag-
NCBI NameLOC131017802
原始查询SmilChr01G001403

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pre-mRNA-processing protein 40A-like
产物pre-mRNA-processing protein 40A-like
ArabidopsisAT1G44910 (PRP40A)
pre-mRNA-processing protein 40A [Source:NCBI gene (formerly Entrezgene);Acc:841057]
identity=39.5; qcov=1; evalue=0; confidence=medium
RiceOs01g0532200
-
identity=56.2; qcov=0.274; evalue=1.33e-110; confidence=weak
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0005685 (U1 snRNP); GO:0045292 (mRNA cis splicing, via spliceosome); GO:0071004 (U2-type prespliceosome)
KEGGsmil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
PfamPF00397 (WW); PF01846 (FF); PF25432 (FF_PRPF40A)
InterPro-
eggNOG-
NRGeneID:131017802

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057802519.1
2 Chromosome 染色体 0.00000 XP_057802519.1
3 Centromere 着丝粒 0.00000 XP_057802519.1
4 Chromatin 染色质 0.00000 XP_057802519.1
5 Telomere 端粒 0.00000 XP_057802519.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:27629109 C T EMS_canonical_SNV CDS_variant 4 B120,B82,C34,C76
Chr1:27629154 C T EMS_canonical_SNV CDS_variant 1 B122
Chr1:27629194 G A EMS_canonical_SNV CDS_variant 1 B104
Chr1:27629304 GC G 1bp_deletion frameshift_variant 1 B25
Chr1:27629304 GC G 1bp_deletion CDS_variant 1 B25
Chr1:27629323 G A EMS_canonical_SNV CDS_variant 5 B45,C34,C7,C72,D8
Chr1:27629324 G A EMS_canonical_SNV CDS_variant 2 B56,B96
Chr1:27629892 C T EMS_canonical_SNV CDS_variant 1 B129
Chr1:27630844 G A EMS_canonical_SNV CDS_variant 1 B104
Chr1:27630851 G A EMS_canonical_SNV CDS_variant 2 B71,C62
Chr1:27630859 C T EMS_canonical_SNV CDS_variant 1 B2
Chr1:27630995 TTC T 2bp_deletion frameshift_variant 1 C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802519.1
1084 aa
N
1
542
1084
WW
WW
FF
FF
FF
FF
FF_PRPF40A
C
PF00397 WW 291-318 aa PF00397 WW 333-359 aa PF01846 FF 537-586 aa PF01846 FF 604-654 aa PF01846 FF 674-721 aa PF01846 FF 746-801 aa PF25432 FF_PRPF40A 809-868 aa
XP_057802523.1
1084 aa
N
1
542
1084
WW
WW
FF
FF
FF
FF
FF_PRPF40A
C
PF00397 WW 291-318 aa PF00397 WW 333-359 aa PF01846 FF 537-586 aa PF01846 FF 604-654 aa PF01846 FF 674-721 aa PF01846 FF 746-801 aa PF25432 FF_PRPF40A 809-868 aa
XP_057802532.1
1084 aa
N
1
542
1084
WW
WW
FF
FF
FF
FF
FF_PRPF40A
C
PF00397 WW 291-318 aa PF00397 WW 333-359 aa PF01846 FF 537-586 aa PF01846 FF 604-654 aa PF01846 FF 674-721 aa PF01846 FF 746-801 aa PF25432 FF_PRPF40A 809-868 aa
XP_057802539.1
1084 aa
N
1
542
1084
WW
WW
FF
FF
FF
FF
FF_PRPF40A
C
PF00397 WW 291-318 aa PF00397 WW 333-359 aa PF01846 FF 537-586 aa PF01846 FF 604-654 aa PF01846 FF 674-721 aa PF01846 FF 746-801 aa PF25432 FF_PRPF40A 809-868 aa
XP_057802545.1
1084 aa
N
1
542
1084
WW
WW
FF
FF
FF
FF
FF_PRPF40A
C
PF00397 WW 291-318 aa PF00397 WW 333-359 aa PF01846 FF 537-586 aa PF01846 FF 604-654 aa PF01846 FF 674-721 aa PF01846 FF 746-801 aa PF25432 FF_PRPF40A 809-868 aa
XP_057802552.1
1084 aa
N
1
542
1084
WW
WW
FF
FF
FF
FF
FF_PRPF40A
C
PF00397 WW 291-318 aa PF00397 WW 333-359 aa PF01846 FF 537-586 aa PF01846 FF 604-654 aa PF01846 FF 674-721 aa PF01846 FF 746-801 aa PF25432 FF_PRPF40A 809-868 aa
XP_057802558.1
1084 aa
N
1
542
1084
WW
WW
FF
FF
FF
FF
FF_PRPF40A
C
PF00397 WW 291-318 aa PF00397 WW 333-359 aa PF01846 FF 537-586 aa PF01846 FF 604-654 aa PF01846 FF 674-721 aa PF01846 FF 746-801 aa PF25432 FF_PRPF40A 809-868 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057802519.1 Pfam PF00397 WW Domain 291 318 2.3e-17 63.5 WW domain
XP_057802519.1 Pfam PF00397 WW Domain 333 359 2.3e-17 63.5 WW domain
XP_057802519.1 Pfam PF01846 FF Family 537 586 3.1e-48 162.3 FF domain
XP_057802519.1 Pfam PF01846 FF Family 604 654 3.1e-48 162.3 FF domain
XP_057802519.1 Pfam PF01846 FF Family 674 721 3.1e-48 162.3 FF domain
XP_057802519.1 Pfam PF01846 FF Family 746 801 3.1e-48 162.3 FF domain
XP_057802519.1 Pfam PF25432 FF_PRPF40A Domain 809 868 1.3e-19 70.5 PRPF40A-like, FF domain
XP_057802523.1 Pfam PF00397 WW Domain 291 318 2.3e-17 63.5 WW domain
XP_057802523.1 Pfam PF00397 WW Domain 333 359 2.3e-17 63.5 WW domain
XP_057802523.1 Pfam PF01846 FF Family 537 586 3.1e-48 162.3 FF domain
XP_057802523.1 Pfam PF01846 FF Family 604 654 3.1e-48 162.3 FF domain
XP_057802523.1 Pfam PF01846 FF Family 674 721 3.1e-48 162.3 FF domain
XP_057802523.1 Pfam PF01846 FF Family 746 801 3.1e-48 162.3 FF domain
XP_057802523.1 Pfam PF25432 FF_PRPF40A Domain 809 868 1.3e-19 70.5 PRPF40A-like, FF domain
XP_057802532.1 Pfam PF00397 WW Domain 291 318 2.3e-17 63.5 WW domain
XP_057802532.1 Pfam PF00397 WW Domain 333 359 2.3e-17 63.5 WW domain
XP_057802532.1 Pfam PF01846 FF Family 537 586 3.1e-48 162.3 FF domain
XP_057802532.1 Pfam PF01846 FF Family 604 654 3.1e-48 162.3 FF domain
XP_057802532.1 Pfam PF01846 FF Family 674 721 3.1e-48 162.3 FF domain
XP_057802532.1 Pfam PF01846 FF Family 746 801 3.1e-48 162.3 FF domain
XP_057802532.1 Pfam PF25432 FF_PRPF40A Domain 809 868 1.3e-19 70.5 PRPF40A-like, FF domain
XP_057802539.1 Pfam PF00397 WW Domain 291 318 2.3e-17 63.5 WW domain
XP_057802539.1 Pfam PF00397 WW Domain 333 359 2.3e-17 63.5 WW domain
XP_057802539.1 Pfam PF01846 FF Family 537 586 3.1e-48 162.3 FF domain
XP_057802539.1 Pfam PF01846 FF Family 604 654 3.1e-48 162.3 FF domain
XP_057802539.1 Pfam PF01846 FF Family 674 721 3.1e-48 162.3 FF domain
XP_057802539.1 Pfam PF01846 FF Family 746 801 3.1e-48 162.3 FF domain
XP_057802539.1 Pfam PF25432 FF_PRPF40A Domain 809 868 1.3e-19 70.5 PRPF40A-like, FF domain
XP_057802545.1 Pfam PF00397 WW Domain 291 318 2.3e-17 63.5 WW domain
XP_057802545.1 Pfam PF00397 WW Domain 333 359 2.3e-17 63.5 WW domain
XP_057802545.1 Pfam PF01846 FF Family 537 586 3.1e-48 162.3 FF domain
XP_057802545.1 Pfam PF01846 FF Family 604 654 3.1e-48 162.3 FF domain
XP_057802545.1 Pfam PF01846 FF Family 674 721 3.1e-48 162.3 FF domain
XP_057802545.1 Pfam PF01846 FF Family 746 801 3.1e-48 162.3 FF domain
XP_057802545.1 Pfam PF25432 FF_PRPF40A Domain 809 868 1.3e-19 70.5 PRPF40A-like, FF domain
XP_057802552.1 Pfam PF00397 WW Domain 291 318 2.3e-17 63.5 WW domain
XP_057802552.1 Pfam PF00397 WW Domain 333 359 2.3e-17 63.5 WW domain
XP_057802552.1 Pfam PF01846 FF Family 537 586 3.1e-48 162.3 FF domain
XP_057802552.1 Pfam PF01846 FF Family 604 654 3.1e-48 162.3 FF domain
XP_057802552.1 Pfam PF01846 FF Family 674 721 3.1e-48 162.3 FF domain
XP_057802552.1 Pfam PF01846 FF Family 746 801 3.1e-48 162.3 FF domain
XP_057802552.1 Pfam PF25432 FF_PRPF40A Domain 809 868 1.3e-19 70.5 PRPF40A-like, FF domain
XP_057802558.1 Pfam PF00397 WW Domain 291 318 2.3e-17 63.5 WW domain
XP_057802558.1 Pfam PF00397 WW Domain 333 359 2.3e-17 63.5 WW domain
XP_057802558.1 Pfam PF01846 FF Family 537 586 3.1e-48 162.3 FF domain
XP_057802558.1 Pfam PF01846 FF Family 604 654 3.1e-48 162.3 FF domain
XP_057802558.1 Pfam PF01846 FF Family 674 721 3.1e-48 162.3 FF domain
XP_057802558.1 Pfam PF01846 FF Family 746 801 3.1e-48 162.3 FF domain
XP_057802558.1 Pfam PF25432 FF_PRPF40A Domain 809 868 1.3e-19 70.5 PRPF40A-like, FF domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057946540.1
GTGTGTTGTGTTGACAGTAGTAGTGTCTCACAATCACAAAAACCCCAAACGAAAACAAAAGAAAGAGAGGGAAATGATATAATGAAGGAAGAAGAAGGAGAAGGAGAAGAAGAAGAAAGAAACTGAATAGAAACTGAAGTAAGCGCCAAATAGGTCAAATCTGTAGAGAAAAATGCTGAAATGGGAAAGCCGAGATTCATGAAAGTTGAGGGGGATTGGTATTTTGTCGTAGCACGTATAAATATATTGAAATTGGTCAT...
XM_057946556.1
GTGTGTTGTGTTGACAGTAGTAGTGTCTCACAATCACAAAAACCCCAAACGAAAACAAAAGAAAGAGAGGGAAATGATATAATGAAGGAAGAAGAAGGAGAAGGAGAAGAAGAAGAAAGAAACTGAATAGAAACTGAAGTAAGCGCCAAATAGGTCAAATCTGTAGAGAAAAATGCTGAAATGGGAAAGCCGAGATTCATGAAAGTTGAGGGGGATTGGTATTTTGTCGTAGCACGTATAAATATATTGGCGTTACAGCA...

CDS

7 records

下载 CDS FASTA
LOC131017802
ATGGCCAATAACCCCCATTCTTCAGGCATGCAGCCTCGTATAATTGGTCATGTTCCTCCTCCAAATTCTCTTCCACCCATGTCAATGCAATTTCGTCCTATGGTTCCACCACCGCCACCACAGCCGTTCGTTCCAGTGGCTCCTCAGCAATTCCACCCAGGTGGACAGTCAAACACAGGGATGCCTCCTCATCCTCCCCCACTCTATCCTCAAGCAGTGCCACCTCTACCATCACAGCTACCCCCACCATCGCAGTTGCC...
LOC131017802
ATGGCCAATAACCCCCATTCTTCAGGCATGCAGCCTCGTATAATTGGTCATGTTCCTCCTCCAAATTCTCTTCCACCCATGTCAATGCAATTTCGTCCTATGGTTCCACCACCGCCACCACAGCCGTTCGTTCCAGTGGCTCCTCAGCAATTCCACCCAGGTGGACAGTCAAACACAGGGATGCCTCCTCATCCTCCCCCACTCTATCCTCAAGCAGTGCCACCTCTACCATCACAGCTACCCCCACCATCGCAGTTGCC...

Protein

7 records

下载 Protein FASTA
XP_057802519.1
MANNPHSSGMQPRIIGHVPPPNSLPPMSMQFRPMVPPPPPQPFVPVAPQQFHPGGQSNTGMPPHPPPLYPQAVPPLPSQLPPPSQLPPPSQPPPPSQPPLPSHPPPQRPGLPGHGLPQGPPHPQPDFQLNRPVMSASPAQLQFSNNYMPSYGGPRISHMPYNLSSSSSGGQQQMNVAPSVQHLPMSQTDTPNFPAGGQSWFPSGSQDMQSAMPMQQTVEQSSGEQAWFSTGTQNIKPVTPLQQNGEQNSAGQQWFPDGNH...
XP_057802523.1
MANNPHSSGMQPRIIGHVPPPNSLPPMSMQFRPMVPPPPPQPFVPVAPQQFHPGGQSNTGMPPHPPPLYPQAVPPLPSQLPPPSQLPPPSQPPPPSQPPLPSHPPPQRPGLPGHGLPQGPPHPQPDFQLNRPVMSASPAQLQFSNNYMPSYGGPRISHMPYNLSSSSSGGQQQMNVAPSVQHLPMSQTDTPNFPAGGQSWFPSGSQDMQSAMPMQQTVEQSSGEQAWFSTGTQNIKPVTPLQQNGEQNSAGQQWFPDGNH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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