当前解析结果
SmilChr01G001425| 统一新 Gene ID | SmilChr01G001425 |
|---|---|
| 名称 | SmilChr01G001425 |
| 描述 | squalene monooxygenase SE1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 27875044 - 27879037 / - |
| NCBI Gene ID | LOC131017851 |
|---|---|
| GeneID | 131017851 |
| locus_tag | - |
| NCBI Name | LOC131017851 |
| 原始查询 | SmilChr01G001425 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | squalene monooxygenase SE1-like |
| 产物 | squalene monooxygenase SE1-like |
| Arabidopsis | AT1G58440 (XF1)FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842213] identity=74.9; qcov=0.962; evalue=0; confidence=high |
| Rice | Os03g0231800- identity=83.7; qcov=0.875; evalue=0; confidence=high |
| GO | GO:0004506 (squalene monooxygenase activity); GO:0005783 (endoplasmic reticulum); GO:0016020 (membrane); GO:0016126 (sterol biosynthetic process); GO:0050660 (flavin adenine dinucleotide binding) |
| KEGG | smil00100 (Steroid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01494 (FAD_binding_3); PF08491 (SE); PF13450 (NAD_binding_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017851 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.60000 | XP_057802580.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057802580.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057802580.1 |
| 4 | Mitochondrion membrane | 线粒体膜 | 0.40000 | XP_057802580.1 |
| 5 | Mitochondrion outer membrane | 线粒体外膜 | 0.40000 | XP_057802580.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:27875380 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B110,C19,C39 |
Chr1:27875573 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B74 |
Chr1:27875573 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B74 |
Chr1:27876009 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | B132,B8,B99 |
Chr1:27876009 |
AT |
A |
1bp_deletion | CDS_variant | 3 | B132,B8,B99 |
Chr1:27876030 |
AGG |
A |
2bp_deletion | frameshift_variant | 4 | B132,B8,B99,C54 |
Chr1:27876030 |
AGG |
A |
2bp_deletion | CDS_variant | 4 | B132,B8,B99,C54 |
Chr1:27876035 |
A |
ACG |
2bp_insertion | frameshift_variant | 4 | B132,B8,B99,C54 |
Chr1:27876035 |
A |
ACG |
2bp_insertion | CDS_variant | 4 | B132,B8,B99,C54 |
Chr1:27876047 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B132,B8,B99,C17 |
Chr1:27876049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B8,B99,C17 |
Chr1:27876418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B136,C27,C43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802580.1PF01494
FAD_binding_3 62-402 aa
PF13450
NAD_binding_8 66-92 aa
PF08491
SE 213-482 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802580.1 |
Pfam | PF01494 |
FAD_binding_3 | Domain | 62 | 402 | 1.5e-17 | 64.6 | FAD binding domain |
XP_057802580.1 |
Pfam | PF13450 |
NAD_binding_8 | Domain | 66 | 92 | 9.3e-06 | 26.6 | NAD(P)-binding Rossmann-like domain |
XP_057802580.1 |
Pfam | PF08491 |
SE | Family | 213 | 482 | 4.6e-118 | 394.0 | Squalene epoxidase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。