当前解析结果
SmilChr01G001435| 统一新 Gene ID | SmilChr01G001435 |
|---|---|
| 名称 | SmilChr01G001435 |
| 描述 | uncharacterized SmilChr01G001435 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 28023427 - 28025523 / - |
| NCBI Gene ID | LOC131018099 |
|---|---|
| GeneID | 131018099 |
| locus_tag | - |
| NCBI Name | LOC131018099 |
| 原始查询 | SmilChr01G001435 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Magnesium transporter CorA-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:814969]; symbol=AT2G04305; hit=AT2G04305; species=arabidopsis; confidence=high |
| 产物 | Magnesium transporter CorA-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:814969]; symbol=AT2G04305; hit=AT2G04305; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G04305 (AT2G04305)Magnesium transporter CorA-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:814969] identity=71.5; qcov=0.967; evalue=0; confidence=high |
| Rice | Os08g0130000 (OsSTA203)- identity=52.7; qcov=1.03; evalue=1.63e-145; confidence=high |
| GO | GO:0016020 (membrane); GO:0030001 (metal ion transport); GO:0046873 (metal ion transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF01544 (CorA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018099 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057802806.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057802806.1 |
| 3 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057802806.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057802806.1 |
| 5 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057802806.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:28023712 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr1:28023904 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C10,C79 |
Chr1:28024128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:28024165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr1:28024399 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C3,C71,D8 |
Chr1:28024505 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | C26 |
Chr1:28024505 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | C26 |
Chr1:28024621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,B29 |
Chr1:28024690 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B127,B20,C1 |
Chr1:28024699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,C83,D6 |
Chr1:28024894 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802806.1PF01544
CorA 75-413 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802806.1 |
Pfam | PF01544 |
CorA | Family | 75 | 413 | 7.8e-30 | 104.9 | CorA-like Mg2+ transporter protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。