当前解析结果
SmilChr01G001487| 统一新 Gene ID | SmilChr01G001487 |
|---|---|
| 名称 | SmilChr01G001487 |
| 描述 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 28653686 - 28658188 / - |
| NCBI Gene ID | LOC131018468 |
|---|---|
| GeneID | 131018468 |
| locus_tag | - |
| NCBI Name | LOC131018468 |
| 原始查询 | SmilChr01G001487 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like |
| 产物 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like |
| Arabidopsis | AT4G33430 (BAK1)BRI1-associated receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:829480] identity=70.8; qcov=0.858; evalue=4.13e-85; confidence=high |
| Rice | Os08g0174700 (BAK1)- identity=66.2; qcov=0.945; evalue=4.26e-83; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018468 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803172.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803172.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803172.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803172.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803172.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:28654045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B51,C31 |
Chr1:28654071 |
CG |
C |
1bp_deletion | frameshift_variant | 4 | A5,B49,C57,C75 |
Chr1:28654071 |
CG |
C |
1bp_deletion | CDS_variant | 4 | A5,B49,C57,C75 |
Chr1:28654086 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B24,C85 |
Chr1:28654844 |
AC |
A |
1bp_deletion | frameshift_variant | 3 | A10,B93,C58 |
Chr1:28654844 |
AC |
A |
1bp_deletion | CDS_variant | 3 | A10,B93,C58 |
Chr1:28654847 |
G |
GAA |
2bp_insertion | frameshift_variant | 3 | A10,B93,C58 |
Chr1:28654847 |
G |
GAA |
2bp_insertion | CDS_variant | 3 | A10,B93,C58 |
Chr1:28655022 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C8 |
Chr1:28655022 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C8 |
Chr1:28657506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr1:28657824 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B122,B124,B72,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803172.1PF08263
LRRNT_2 27-66 aa
PF23598
LRR_14 79-174 aa
PF13855
LRR_8 93-153 aa
PF00560
LRR_1 94-116 aa
PF00560
LRR_1 119-140 aa
PF00560
LRR_1 142-162 aa
PF00560
LRR_1 167-183 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803172.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 27 | 66 | 2.3e-11 | 44.5 | Leucine rich repeat N-terminal domain |
XP_057803172.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 79 | 174 | 6.8e-13 | 48.8 | Leucine-rich repeat region |
XP_057803172.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 93 | 153 | 3e-12 | 46.8 | Leucine rich repeat |
XP_057803172.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 94 | 116 | 2.2e-16 | 57.2 | Leucine Rich Repeat |
XP_057803172.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 119 | 140 | 2.2e-16 | 57.2 | Leucine Rich Repeat |
XP_057803172.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 142 | 162 | 2.2e-16 | 57.2 | Leucine Rich Repeat |
XP_057803172.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 167 | 183 | 2.2e-16 | 57.2 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。