Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001490`

染色体: Chr01 坐标: 28680245-28683140 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001490`
名称	SmilChr01G001490
描述	beta-xylosidase/alpha-L-arabinofuranosidase 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	28680245 - 28683140 / `+`

ID 对照

NCBI Gene ID	`LOC131018495`
GeneID	`131018495`
locus_tag	`-`
NCBI Name	`LOC131018495`
原始查询	`SmilChr01G001490`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-xylosidase/alpha-L-arabinofuranosidase 1-like
产物	beta-xylosidase/alpha-L-arabinofuranosidase 1-like
Arabidopsis	`AT5G64570` (XYL4) beta-D-xylosidase 4 [Source:NCBI gene (formerly Entrezgene);Acc:836578] identity=66.8; qcov=1; evalue=0; confidence=high
Rice	`Os04g0640700` - identity=64.9; qcov=0.964; evalue=0; confidence=high
GO	GO:0009044 (xylan 1,4-beta-xylosidase activity); GO:0009505 (plant-type cell wall); GO:0031222 (arabinan catabolic process); GO:0045493 (xylan catabolic process); GO:0046556 (alpha-L-arabinofuranosidase activity)
KEGG	smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00933 (Glyco_hydro_3); PF01915 (Glyco_hydro_3_C); PF14310 (Fn3-like)
InterPro	-
eggNOG	-
NR	GeneID:131018495

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057803198.1`
2	Nucleus	细胞核	0.00000	`XP_057803198.1`
3	Chromosome	染色体	0.00000	`XP_057803198.1`
4	Centromere	着丝粒	0.00000	`XP_057803198.1`
5	Chromatin	染色质	0.00000	`XP_057803198.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:28680339`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr1:28680418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr1:28680515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A5,B35,B76,B78
`Chr1:28680516`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr1:28680530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr1:28680630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B106,B133,B70,C3,C74
`Chr1:28680682`	`AG`	`A`	1bp_deletion	CDS_variant	1	D10
`Chr1:28680778`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr1:28680803`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B109,B138,B29
`Chr1:28680814`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A5,B35,B76,B78
`Chr1:28680826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:28680869`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803198.1

769 aa

384

769

Glyco_hydro_3

Glyco_hydro_3_C

Fn3-like

PF00933 Glyco_hydro_3 115-356 aa PF01915 Glyco_hydro_3_C 403-633 aa PF14310 Fn3-like 693-760 aa

XP_057803203.1

768 aa

384

768

Glyco_hydro_3

Glyco_hydro_3_C

Fn3-like

PF00933 Glyco_hydro_3 115-356 aa PF01915 Glyco_hydro_3_C 403-632 aa PF14310 Fn3-like 692-759 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803198.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	115	356	7.1e-35	121.7	Glycosyl hydrolase family 3 N terminal domain
`XP_057803198.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	403	633	2.7e-46	158.8	Glycosyl hydrolase family 3 C-terminal domain
`XP_057803198.1`	Pfam	`PF14310`	Fn3-like	Family	693	760	3.6e-10	40.5	Fibronectin type III-like domain
`XP_057803203.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	115	356	7e-35	121.7	Glycosyl hydrolase family 3 N terminal domain
`XP_057803203.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	403	632	2.9e-48	165.2	Glycosyl hydrolase family 3 C-terminal domain
`XP_057803203.1`	Pfam	`PF14310`	Fn3-like	Family	692	759	3.6e-10	40.5	Fibronectin type III-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057947215.1
ATTCTTTCTTTGTTTCTTTGCAATGGCCCCTGCAAAACACTCTGTTTTTCTCTGTTTTGCCCTCCTCTACATAATCCTCCTATTTTTTAGGCCAGTTCTTGCTCAAGATCGGCCCGTTTTCGCCTGCGACGTGGAGAGCAATCCCGAGCTAAAGAATCTGAGCTTCTGCGACACGTCATTGGACGTGCAAGCCCGGGTTAGCGACCTCATGAGCATGTTAACTCTGCAGGAGAAAATTGGGTGGCTGGTGAATGGTGCCA...

XM_057947220.1
ATTCTTTCTTTGTTTCTTTGCAATGGCCCCTGCAAAACACTCTGTTTTTCTCTGTTTTGCCCTCCTCTACATAATCCTCCTATTTTTTAGGCCAGTTCTTGCTCAAGATCGGCCCGTTTTCGCCTGCGACGTGGAGAGCAATCCCGAGCTAAAGAATCTGAGCTTCTGCGACACGTCATTGGACGTGCAAGCCCGGGTTAGCGACCTCATGAGCATGTTAACTCTGCAGGAGAAAATTGGGTGGCTGGTGAATGGTGCCA...

CDS

2 records

下载 CDS FASTA

LOC131018495
ATGGCCCCTGCAAAACACTCTGTTTTTCTCTGTTTTGCCCTCCTCTACATAATCCTCCTATTTTTTAGGCCAGTTCTTGCTCAAGATCGGCCCGTTTTCGCCTGCGACGTGGAGAGCAATCCCGAGCTAAAGAATCTGAGCTTCTGCGACACGTCATTGGACGTGCAAGCCCGGGTTAGCGACCTCATGAGCATGTTAACTCTGCAGGAGAAAATTGGGTGGCTGGTGAATGGTGCCAGGGGAGTTAGCCGGCTTGGGAT...

Protein

2 records

下载 Protein FASTA

XP_057803198.1
MAPAKHSVFLCFALLYIILLFFRPVLAQDRPVFACDVESNPELKNLSFCDTSLDVQARVSDLMSMLTLQEKIGWLVNGARGVSRLGIPDYQWWSEALHGISVVGPGSHFTSLVPGATSFPQVILTAATFNETLFETIGKVVSTEARAMYNVGLAGLTFWAPNVNIFRDPRWGRGHETPGEDPVLASKYAAAFVRGLQQRDDGDKDKLKVAACCKQYTAYDVDNWKGIQRYTFNALVTQQDFDDTFQPPFKSCVVDGNVAS...

XP_057803203.1
MAPAKHSVFLCFALLYIILLFFRPVLAQDRPVFACDVESNPELKNLSFCDTSLDVQARVSDLMSMLTLQEKIGWLVNGARGVSRLGIPDYQWWSEALHGISVVGPGSHFTSLVPGATSFPQVILTAATFNETLFETIGKVVSTEARAMYNVGLAGLTFWAPNVNIFRDPRWGRGHETPGEDPVLASKYAAAFVRGLQQRDDGDKDKLKVAACCKQYTAYDVDNWKGIQRYTFNALVTQQDFDDTFQPPFKSCVVDGNVAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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