当前解析结果
SmilChr01G001492| 统一新 Gene ID | SmilChr01G001492 |
|---|---|
| 名称 | SmilChr01G001492 |
| 描述 | beta-xylosidase/alpha-L-arabinofuranosidase 2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 28731751 - 28735693 / + |
| NCBI Gene ID | LOC131018506 |
|---|---|
| GeneID | 131018506 |
| locus_tag | - |
| NCBI Name | LOC131018506 |
| 原始查询 | SmilChr01G001492 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-xylosidase/alpha-L-arabinofuranosidase 2-like |
| 产物 | beta-xylosidase/alpha-L-arabinofuranosidase 2-like |
| Arabidopsis | AT5G64570 (XYL4)beta-D-xylosidase 4 [Source:NCBI gene (formerly Entrezgene);Acc:836578] identity=67.6; qcov=0.988; evalue=0; confidence=high |
| Rice | Os04g0640700- identity=66.9; qcov=0.948; evalue=0; confidence=high |
| GO | GO:0009044 (xylan 1,4-beta-xylosidase activity); GO:0009505 (plant-type cell wall); GO:0031222 (arabinan catabolic process); GO:0045493 (xylan catabolic process); GO:0046556 (alpha-L-arabinofuranosidase activity) |
| KEGG | smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00933 (Glyco_hydro_3); PF01915 (Glyco_hydro_3_C); PF14310 (Fn3-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018506 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057803210.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803210.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803210.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803210.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803210.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:28732206 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:28732266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr1:28732289 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C32,C35,C68 |
Chr1:28732309 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr1:28732353 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C15,D9 |
Chr1:28732525 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C13,C7 |
Chr1:28733313 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr1:28733787 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B109,B138,B29 |
Chr1:28733801 |
TC |
T |
1bp_deletion | frameshift_variant | 6 | A1,B39,B84,C66,C71,C83 |
Chr1:28733995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B70,C3 |
Chr1:28734055 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,C19,C83 |
Chr1:28734076 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803210.1PF00933
Glyco_hydro_3 128-370 aa
PF01915
Glyco_hydro_3_C 416-645 aa
PF14310
Fn3-like 705-772 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803210.1 |
Pfam | PF00933 |
Glyco_hydro_3 | Domain | 128 | 370 | 4.4e-36 | 125.6 | Glycosyl hydrolase family 3 N terminal domain |
XP_057803210.1 |
Pfam | PF01915 |
Glyco_hydro_3_C | Domain | 416 | 645 | 6.5e-50 | 170.6 | Glycosyl hydrolase family 3 C-terminal domain |
XP_057803210.1 |
Pfam | PF14310 |
Fn3-like | Family | 705 | 772 | 5.4e-10 | 40.0 | Fibronectin type III-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。