Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G001493

染色体: Chr01 坐标: 28736821-28737817 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G001493
名称SmilChr01G001493
描述uncharacterized SmilChr01G001493
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向28736821 - 28737817 / +

ID 对照

NCBI Gene IDLOC131005735
GeneID131005735
locus_tag-
NCBI NameLOC131005735
原始查询SmilChr01G001493

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low
产物DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low
ArabidopsisAT1G43760 (AT1G43760)
DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]
identity=27.5; qcov=0.615; evalue=8.81e-12; confidence=low
RiceOs06g0205337
-
identity=27.1; qcov=0.598; evalue=1.18e-10; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131005735

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057788776.1
2 Nucleus 细胞核 0.60000 XP_057788776.1
3 Cytosol 细胞质基质 0.40000 XP_057788776.1
4 Chromosome 染色体 0.00000 XP_057788776.1
5 Centromere 着丝粒 0.00000 XP_057788776.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:28736829 G A EMS_canonical_SNV CDS_variant 1 B1
Chr1:28736872 C T EMS_canonical_SNV CDS_variant 2 C19,C6
Chr1:28736878 GAA G 2bp_deletion frameshift_variant 3 B19,C19,C6
Chr1:28736878 GAA G 2bp_deletion CDS_variant 3 B19,C19,C6
Chr1:28736882 T TTC 2bp_insertion frameshift_variant 3 B19,C19,C6
Chr1:28736882 T TTC 2bp_insertion CDS_variant 3 B19,C19,C6
Chr1:28736884 G A EMS_canonical_SNV CDS_variant 1 C80
Chr1:28736894 GCC G 2bp_deletion frameshift_variant 3 B19,C19,C6
Chr1:28736894 GCC G 2bp_deletion CDS_variant 3 B19,C19,C6
Chr1:28736904 C T EMS_canonical_SNV CDS_variant 5 B19,C19,C6,C80,D3
Chr1:28736936 C T EMS_canonical_SNV CDS_variant 3 A5,C80,D3
Chr1:28736953 G A EMS_canonical_SNV CDS_variant 1 B132

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057932793.1
ATGGTACAGGAAATTGATTGTTGCTTCGTTCAAGAAACAAAGTTGGAGAAGCTCAGTGAAATCGAATTGAGAGGCCTTTGGGGCTCTGAAAAATTTGGGTTTGCAAGCCGAAAAGCAGAGGGGAGATCTGGTGGAATACTGACCATCTGGAATTCTGATATTTTCTCTTGTTCGAGTACTTGGGATGTCCCGGGCGCCCTTTTTGTGAATGACAATATCGTGATTCCTGCGTTTGTGTGGCTGGGGATTTTAACTATTCG...

CDS

1 records

下载 CDS FASTA
LOC131005735
ATGGTACAGGAAATTGATTGTTGCTTCGTTCAAGAAACAAAGTTGGAGAAGCTCAGTGAAATCGAATTGAGAGGCCTTTGGGGCTCTGAAAAATTTGGGTTTGCAAGCCGAAAAGCAGAGGGGAGATCTGGTGGAATACTGACCATCTGGAATTCTGATATTTTCTCTTGTTCGAGTACTTGGGATGTCCCGGGCGCCCTTTTTGTGAATGACAATATCGTGATTCCTGCGTTTGTGTGGCTGGGGATTTTAACTATTCG...

Protein

1 records

下载 Protein FASTA
XP_057788776.1
MVQEIDCCFVQETKLEKLSEIELRGLWGSEKFGFASRKAEGRSGGILTIWNSDIFSCSSTWDVPGALFVNDNIVIPAFVWLGILTIRHESERVGRGTQFEPRDVSAFDNFIKTNDLVDVRLQGRLFTWYQPNGLCKSKLDRFLVNGKWLEKWSHSKVIGLQRTVSDHCPLILETKSIDWGPKPFRFLNAWISHCDFEKVVKESWERPGISGWKNFVFKEKLKRLKEDLKKWNQSSFGSIEANIKKLKQDIQKWDAIDDTL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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