当前解析结果
SmilChr01G001500| 统一新 Gene ID | SmilChr01G001500 |
|---|---|
| 名称 | SmilChr01G001500 |
| 描述 | peroxidase 43-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 28851143 - 28855582 / - |
| NCBI Gene ID | LOC131018549 |
|---|---|
| GeneID | 131018549 |
| locus_tag | - |
| NCBI Name | LOC131018549 |
| 原始查询 | SmilChr01G001500 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxidase 43-like |
| 产物 | peroxidase 43-like |
| Arabidopsis | AT4G25980 (AT4G25980)peroxidase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828704] identity=65.5; qcov=0.93; evalue=1.48e-148; confidence=high |
| Rice | Os11g0210100 (prx132)- identity=53.8; qcov=0.939; evalue=3.46e-115; confidence=high |
| GO | GO:0004601 (peroxidase activity); GO:0006979 (response to oxidative stress); GO:0009505 (plant-type cell wall); GO:0009506 (plasmodesma); GO:0020037 (heme binding); GO:0042744 (hydrogen peroxide catabolic process) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00141 (peroxidase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018549 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057803249.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057803249.1 |
| 3 | Cell wall | 细胞壁 | 0.20000 | XP_057803249.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057803249.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057803249.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:28851287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B47,D7 |
Chr1:28851346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C19,C44,C82 |
Chr1:28851348 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,C46 |
Chr1:28851356 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | C19,C44,C82,C83,D10 |
Chr1:28851368 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr1:28851372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,B13 |
Chr1:28851374 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B121,B33,B60 |
Chr1:28851386 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr1:28851473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr1:28851490 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B112,C43 |
Chr1:28851512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,B13 |
Chr1:28851518 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057803249.1PF00141
peroxidase 48-286 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803249.1 |
Pfam | PF00141 |
peroxidase | Domain | 48 | 286 | 3.5e-73 | 247.0 | Peroxidase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。