Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001515`

染色体: Chr01 坐标: 28998304-29000650 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001515`
名称	SmilChr01G001515
描述	protein ROH1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	28998304 - 29000650 / `+`

ID 对照

NCBI Gene ID	`LOC131018619`
GeneID	`131018619`
locus_tag	`-`
NCBI Name	`LOC131018619`
原始查询	`SmilChr01G001515`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein ROH1-like
产物	protein ROH1-like
Arabidopsis	`AT1G74450` (AT1G74450) BPS1-like protein (DUF793) [Source:NCBI gene (formerly Entrezgene);Acc:843786] identity=54.1; qcov=0.931; evalue=4.24e-136; confidence=high
Rice	`Os12g0164600` (OsSTA274) - identity=43.5; qcov=0.891; evalue=2.45e-77; confidence=medium
GO	-
KEGG	-
Pfam	PF05633 (ROH1-like)
InterPro	-
eggNOG	-
NR	GeneID:131018619

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057803318.1`
2	Nucleus	细胞核	0.80000	`XP_057803318.1`
3	Cytosol	细胞质基质	0.80000	`XP_057803318.1`
4	Chromosome	染色体	0.00000	`XP_057803318.1`
5	Centromere	着丝粒	0.00000	`XP_057803318.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:28999311`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr1:28999388`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B17,B49,B67
`Chr1:28999498`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A9,B18,B61,B70,C4
`Chr1:28999631`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:28999700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B121,B33,B60
`Chr1:28999777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr1:28999825`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B17,B49,B67,C60
`Chr1:28999870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr1:28999887`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr1:28999890`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:28999999`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr1:29000143`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B32,C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803318.1

386 aa

193

386

ROH1-like

PF05633 ROH1-like 13-380 aa

XP_057803320.1

386 aa

193

386

ROH1-like

PF05633 ROH1-like 13-380 aa

XP_057803323.1

377 aa

188

377

ROH1-like

PF05633 ROH1-like 6-371 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803318.1`	Pfam	`PF05633`	ROH1-like	Family	13	380	8.5e-130	433.9	Protein ROH1-like
`XP_057803320.1`	Pfam	`PF05633`	ROH1-like	Family	13	380	8.5e-130	433.9	Protein ROH1-like
`XP_057803323.1`	Pfam	`PF05633`	ROH1-like	Family	6	371	5.1e-126	421.5	Protein ROH1-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057947335.1
AAATAAATTGCTTTTTTTTCTACTAATAAATTTGATATTAATATATAGAAAATCAAAGCACACATTTATACGGGCGCGCACACAATTGTATTTGTGTTGTGCCACCAGCAGCTATACAGTTGTCTTTCCTCTCTGGTTTCCCTTTCTCTATTTTCGCTTTATTTTTCTTGGTGTCAAATATTTTCCACTCTACTTCTCTTCCAAATCACTCGTAGCTATGCCTTTACTAGGGTTTGAATTTCCGTTTTGCTTCAAAATTT...

XM_057947337.1
TATAGAAAATCAAAGCACACATTTATACGGGCGCGCACACAATTGTATTTGTGTTGTGCCACCAGCAGCTATACAGTTGTCTTTCCTCTCTGGTTTCCCTTTCTCTATTTTCGCTTTATTTTTCTTGGTGTCAAATATTTTCCACTCTACTTCTCTTCCAAATCACTCGTAGCTATGCCTTTACTAGGGTTTGAATTTCCGTTTTGCTTCAAAATTTCACATGTTTCTGGCGTCCTCATTTTCATGTAGACATCATATAG...

CDS

3 records

下载 CDS FASTA

LOC131018619
ATGTTTCTGGCGTCCTCATTTTCATGTAGACATCATATAGCCGTAACAATCAAGGTTCATTCAGAAATGAGCCATGATTCGAATATCAAGTACCTGGAGTCGTTCCAACGACAAGTTTTTGCCCGTTTCCATGACCTTTCATTGGTTAATGCGGACGAGCTCCTCTCCGTTTCTTGGATACACAAATTGTTGGACGCGTTCACTACGTGCCAGGAGGATTTCAGCGCCTTACTATCCGATAACAAAGCATTTCTCTCGAA...

LOC131018619
ATGCCTTCTCCAAATAATCATGGATCCCATATCCCTTTTGCATCTTTTCGTCGCTCTATATTGACTATAAGAAGTGATCAGGTTCATTCAGAAATGAGCCATGATTCGAATATCAAGTACCTGGAGTCGTTCCAACGACAAGTTTTTGCCCGTTTCCATGACCTTTCATTGGTTAATGCGGACGAGCTCCTCTCCGTTTCTTGGATACACAAATTGTTGGACGCGTTCACTACGTGCCAGGAGGATTTCAGCGCCTTACT...

Protein

3 records

下载 Protein FASTA

XP_057803318.1
MPSPNNHGSHIPFASFRRSILTIRSDQVHSEMSHDSNIKYLESFQRQVFARFHDLSLVNADELLSVSWIHKLLDAFTTCQEDFSALLSDNKAFLSKPPADRLATEYFERTIKAMDIFNATRDGVETVRVWQKHLEIVVCALDDRQRMLGESQFRRARKALMDLALLMLDDKDTGSVFSHRNRSFGRKGKEHHRSSSGHSRSLSWSVSHSWSASKQLQSIANNLVPPKASEIAATNGLAMLIFAMSYILMFVLWVLVAAIP...

XP_057803320.1
MPSPNNHGSHIPFASFRRSILTIRSDQVHSEMSHDSNIKYLESFQRQVFARFHDLSLVNADELLSVSWIHKLLDAFTTCQEDFSALLSDNKAFLSKPPADRLATEYFERTIKAMDIFNATRDGVETVRVWQKHLEIVVCALDDRQRMLGESQFRRARKALMDLALLMLDDKDTGSVFSHRNRSFGRKGKEHHRSSSGHSRSLSWSVSHSWSASKQLQSIANNLVPPKASEIAATNGLAMLIFAMSYILMFVLWVLVAAIP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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