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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G001517

染色体: Chr01 坐标: 29048994-29051927 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G001517
名称SmilChr01G001517
描述pentatricopeptide repeat-containing protein At2g06000-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向29048994 - 29051927 / +

ID 对照

NCBI Gene IDLOC131018632
GeneID131018632
locus_tag-
NCBI NameLOC131018632
原始查询SmilChr01G001517

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At2g06000-like
产物pentatricopeptide repeat-containing protein At2g06000-like
ArabidopsisAT2G06000 (AT2G06000)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:815153]
identity=43.3; qcov=0.975; evalue=1.24e-144; confidence=medium
RiceOs04g0446100
-
identity=44.4; qcov=0.778; evalue=9.19e-125; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131018632

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057803333.1
2 Chloroplast 叶绿体 0.20000 XP_057803333.1
3 Nucleus 细胞核 0.00000 XP_057803333.1
4 Chromosome 染色体 0.00000 XP_057803333.1
5 Centromere 着丝粒 0.00000 XP_057803333.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:29049732 G A EMS_canonical_SNV CDS_variant 2 C10,C9
Chr1:29049831 G A EMS_canonical_SNV CDS_variant 4 B1,B32,C57,C75
Chr1:29049902 G A EMS_canonical_SNV CDS_variant 3 B17,B49,B67
Chr1:29050039 C T EMS_canonical_SNV CDS_variant 1 B104
Chr1:29050120 G A EMS_canonical_SNV CDS_variant 1 B77
Chr1:29050179 TC T 1bp_deletion frameshift_variant 1 B13
Chr1:29050179 TC T 1bp_deletion CDS_variant 1 B13
Chr1:29050763 C T EMS_canonical_SNV CDS_variant 1 B32
Chr1:29050974 G A EMS_canonical_SNV CDS_variant 3 B32,B44,C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803333.1
550 aa
N
1
275
550
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
TPR_24
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF01535 PPR 106-133 aa PF23276 TPR_24 204-311 aa PF13812 PPR_3 207-258 aa PF12854 PPR_1 209-242 aa PF13041 PPR_2 213-262 aa PF01535 PPR 216-246 aa PF12854 PPR_1 245-275 aa PF01535 PPR 251-278 aa PF13812 PPR_3 273-333 aa PF12854 PPR_1 282-312 aa PF13041 PPR_2 284-333 aa PF01535 PPR 287-317 aa PF17177 PPR_long 308-417 aa PF12854 PPR_1 315-348 aa PF23276 TPR_24 315-415 aa PF13041 PPR_2 319-367 aa PF01535 PPR 322-350 aa PF13812 PPR_3 342-399 aa PF12854 PPR_1 352-382 aa PF13041 PPR_2 354-403 aa PF01535 PPR 357-387 aa PF12854 PPR_1 385-416 aa PF01535 PPR 393-417 aa PF12854 PPR_1 422-454 aa PF13041 PPR_2 428-473 aa PF01535 PPR 429-458 aa PF13812 PPR_3 449-506 aa PF12854 PPR_1 456-488 aa PF13041 PPR_2 463-507 aa PF01535 PPR 464-493 aa
XP_057803339.1
550 aa
N
1
275
550
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
TPR_24
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF01535 PPR 106-133 aa PF23276 TPR_24 204-311 aa PF13812 PPR_3 207-258 aa PF12854 PPR_1 209-242 aa PF13041 PPR_2 213-262 aa PF01535 PPR 216-246 aa PF12854 PPR_1 245-275 aa PF01535 PPR 251-278 aa PF13812 PPR_3 273-333 aa PF12854 PPR_1 282-312 aa PF13041 PPR_2 284-333 aa PF01535 PPR 287-317 aa PF17177 PPR_long 308-417 aa PF12854 PPR_1 315-348 aa PF23276 TPR_24 315-415 aa PF13041 PPR_2 319-367 aa PF01535 PPR 322-350 aa PF13812 PPR_3 342-399 aa PF12854 PPR_1 352-382 aa PF13041 PPR_2 354-403 aa PF01535 PPR 357-387 aa PF12854 PPR_1 385-416 aa PF01535 PPR 393-417 aa PF12854 PPR_1 422-454 aa PF13041 PPR_2 428-473 aa PF01535 PPR 429-458 aa PF13812 PPR_3 449-506 aa PF12854 PPR_1 456-488 aa PF13041 PPR_2 463-507 aa PF01535 PPR 464-493 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057803333.1 Pfam PF01535 PPR Repeat 106 133 1.9e-71 232.1 PPR repeat
XP_057803333.1 Pfam PF23276 TPR_24 Repeat 204 311 7e-25 88.2 Pentatricopeptide repeat-containing protein
XP_057803333.1 Pfam PF13812 PPR_3 Repeat 207 258 2.2e-40 137.3 Pentatricopeptide repeat domain
XP_057803333.1 Pfam PF12854 PPR_1 Repeat 209 242 8.1e-93 304.5 PPR repeat
XP_057803333.1 Pfam PF13041 PPR_2 Repeat 213 262 1.1e-101 333.5 PPR repeat family
XP_057803333.1 Pfam PF01535 PPR Repeat 216 246 1.9e-71 232.1 PPR repeat
XP_057803333.1 Pfam PF12854 PPR_1 Repeat 245 275 8.1e-93 304.5 PPR repeat
XP_057803333.1 Pfam PF01535 PPR Repeat 251 278 1.9e-71 232.1 PPR repeat
XP_057803333.1 Pfam PF13812 PPR_3 Repeat 273 333 2.2e-40 137.3 Pentatricopeptide repeat domain
XP_057803333.1 Pfam PF12854 PPR_1 Repeat 282 312 8.1e-93 304.5 PPR repeat
XP_057803333.1 Pfam PF13041 PPR_2 Repeat 284 333 1.1e-101 333.5 PPR repeat family
XP_057803333.1 Pfam PF01535 PPR Repeat 287 317 1.9e-71 232.1 PPR repeat
XP_057803333.1 Pfam PF17177 PPR_long Repeat 308 417 1.6e-26 93.7 Pentacotripeptide-repeat region of PRORP
XP_057803333.1 Pfam PF12854 PPR_1 Repeat 315 348 8.1e-93 304.5 PPR repeat
XP_057803333.1 Pfam PF23276 TPR_24 Repeat 315 415 7e-25 88.2 Pentatricopeptide repeat-containing protein
XP_057803333.1 Pfam PF13041 PPR_2 Repeat 319 367 1.1e-101 333.5 PPR repeat family
XP_057803333.1 Pfam PF01535 PPR Repeat 322 350 1.9e-71 232.1 PPR repeat
XP_057803333.1 Pfam PF13812 PPR_3 Repeat 342 399 2.2e-40 137.3 Pentatricopeptide repeat domain
XP_057803333.1 Pfam PF12854 PPR_1 Repeat 352 382 8.1e-93 304.5 PPR repeat
XP_057803333.1 Pfam PF13041 PPR_2 Repeat 354 403 1.1e-101 333.5 PPR repeat family
XP_057803333.1 Pfam PF01535 PPR Repeat 357 387 1.9e-71 232.1 PPR repeat
XP_057803333.1 Pfam PF12854 PPR_1 Repeat 385 416 8.1e-93 304.5 PPR repeat
XP_057803333.1 Pfam PF01535 PPR Repeat 393 417 1.9e-71 232.1 PPR repeat
XP_057803333.1 Pfam PF12854 PPR_1 Repeat 422 454 8.1e-93 304.5 PPR repeat
XP_057803333.1 Pfam PF13041 PPR_2 Repeat 428 473 1.1e-101 333.5 PPR repeat family
XP_057803333.1 Pfam PF01535 PPR Repeat 429 458 1.9e-71 232.1 PPR repeat
XP_057803333.1 Pfam PF13812 PPR_3 Repeat 449 506 2.2e-40 137.3 Pentatricopeptide repeat domain
XP_057803333.1 Pfam PF12854 PPR_1 Repeat 456 488 8.1e-93 304.5 PPR repeat
XP_057803333.1 Pfam PF13041 PPR_2 Repeat 463 507 1.1e-101 333.5 PPR repeat family
XP_057803333.1 Pfam PF01535 PPR Repeat 464 493 1.9e-71 232.1 PPR repeat
XP_057803339.1 Pfam PF01535 PPR Repeat 106 133 1.9e-71 232.1 PPR repeat
XP_057803339.1 Pfam PF23276 TPR_24 Repeat 204 311 7e-25 88.2 Pentatricopeptide repeat-containing protein
XP_057803339.1 Pfam PF13812 PPR_3 Repeat 207 258 2.2e-40 137.3 Pentatricopeptide repeat domain
XP_057803339.1 Pfam PF12854 PPR_1 Repeat 209 242 8.1e-93 304.5 PPR repeat
XP_057803339.1 Pfam PF13041 PPR_2 Repeat 213 262 1.1e-101 333.5 PPR repeat family
XP_057803339.1 Pfam PF01535 PPR Repeat 216 246 1.9e-71 232.1 PPR repeat
XP_057803339.1 Pfam PF12854 PPR_1 Repeat 245 275 8.1e-93 304.5 PPR repeat
XP_057803339.1 Pfam PF01535 PPR Repeat 251 278 1.9e-71 232.1 PPR repeat
XP_057803339.1 Pfam PF13812 PPR_3 Repeat 273 333 2.2e-40 137.3 Pentatricopeptide repeat domain
XP_057803339.1 Pfam PF12854 PPR_1 Repeat 282 312 8.1e-93 304.5 PPR repeat
XP_057803339.1 Pfam PF13041 PPR_2 Repeat 284 333 1.1e-101 333.5 PPR repeat family
XP_057803339.1 Pfam PF01535 PPR Repeat 287 317 1.9e-71 232.1 PPR repeat
XP_057803339.1 Pfam PF17177 PPR_long Repeat 308 417 1.6e-26 93.7 Pentacotripeptide-repeat region of PRORP
XP_057803339.1 Pfam PF12854 PPR_1 Repeat 315 348 8.1e-93 304.5 PPR repeat
XP_057803339.1 Pfam PF23276 TPR_24 Repeat 315 415 7e-25 88.2 Pentatricopeptide repeat-containing protein
XP_057803339.1 Pfam PF13041 PPR_2 Repeat 319 367 1.1e-101 333.5 PPR repeat family
XP_057803339.1 Pfam PF01535 PPR Repeat 322 350 1.9e-71 232.1 PPR repeat
XP_057803339.1 Pfam PF13812 PPR_3 Repeat 342 399 2.2e-40 137.3 Pentatricopeptide repeat domain
XP_057803339.1 Pfam PF12854 PPR_1 Repeat 352 382 8.1e-93 304.5 PPR repeat
XP_057803339.1 Pfam PF13041 PPR_2 Repeat 354 403 1.1e-101 333.5 PPR repeat family
XP_057803339.1 Pfam PF01535 PPR Repeat 357 387 1.9e-71 232.1 PPR repeat
XP_057803339.1 Pfam PF12854 PPR_1 Repeat 385 416 8.1e-93 304.5 PPR repeat
XP_057803339.1 Pfam PF01535 PPR Repeat 393 417 1.9e-71 232.1 PPR repeat
XP_057803339.1 Pfam PF12854 PPR_1 Repeat 422 454 8.1e-93 304.5 PPR repeat
XP_057803339.1 Pfam PF13041 PPR_2 Repeat 428 473 1.1e-101 333.5 PPR repeat family
XP_057803339.1 Pfam PF01535 PPR Repeat 429 458 1.9e-71 232.1 PPR repeat
XP_057803339.1 Pfam PF13812 PPR_3 Repeat 449 506 2.2e-40 137.3 Pentatricopeptide repeat domain
XP_057803339.1 Pfam PF12854 PPR_1 Repeat 456 488 8.1e-93 304.5 PPR repeat
XP_057803339.1 Pfam PF13041 PPR_2 Repeat 463 507 1.1e-101 333.5 PPR repeat family
XP_057803339.1 Pfam PF01535 PPR Repeat 464 493 1.9e-71 232.1 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057947356.1
CGAGTTGCGAGGAGAATAGGGTGGGAGAATCGCAAGTTTGCAACTGTAAAAGAGGTCTTTCAGGCTAATATTGACCAAACAAGTCTTGCTTTTGATTGCTTCAAAAAAAAAAAAAGTCTTGCTTTTGATATATACCTTCATCTCTCCGCCGCGCCTTCGCCGCCGTCAACTAACCCTAGTTTCTACACCAGCATTTGCAGATCTGCACGCTCTCCAAACTCAACGGCCCCATTTTTTTATTCCCTCCGATTCCAAACCCT...
XM_057947350.1
TGGGAGAATCGCAAGTTTGCAACTGTAAAAGAGGTCTTTCAGGCTAATATTGACCAAACAAGTCTTGCTTTTGATTGCTTCAAAAAAAAAAAAAGTCTTGCTTTTGATATATACCTTCATCTCTCCGCCGCGCCTTCGCCGCCGTCAACTAACCCTAGTTTCTACACCAGCATTTGCAGATCTGCACGCTCTCCAAACTCAACGGCCCCATTTTTTTATTCCCTCCGATTCCAAACCCTAAATCCAGAGCTTTTTTCCAC...

CDS

2 records

下载 CDS FASTA
LOC131018632
ATGGAGTTTTGGCATCAGCGGACAATGATCTCGAAGGCCCTATCGACGGCGTTATTCCACAGTCAGCCGCGCTCGGAATCCCCCAATCCTTCCCCTTCATCAACTCAGTGGTTCGTAAAAGTGGTCTTCACACTCTGCGCTCGTCACCCCCAGTCGCTTGCTATTCTTAATTCTGATTATTTTCGAAATAATTTGGATCCTTTCGTTGCATATGGTGTGATTTATCTATTGAACAGTAAATTGGATGAGCCTAATTTGGC...
LOC131018632
ATGGAGTTTTGGCATCAGCGGACAATGATCTCGAAGGCCCTATCGACGGCGTTATTCCACAGTCAGCCGCGCTCGGAATCCCCCAATCCTTCCCCTTCATCAACTCAGTGGTTCGTAAAAGTGGTCTTCACACTCTGCGCTCGTCACCCCCAGTCGCTTGCTATTCTTAATTCTGATTATTTTCGAAATAATTTGGATCCTTTCGTTGCATATGGTGTGATTTATCTATTGAACAGTAAATTGGATGAGCCTAATTTGGC...

Protein

2 records

下载 Protein FASTA
XP_057803333.1
MEFWHQRTMISKALSTALFHSQPRSESPNPSPSSTQWFVKVVFTLCARHPQSLAILNSDYFRNNLDPFVAYGVIYLLNSKLDEPNLACSFFSYSRLNLNVMHTESTFDLLLRSLCRANLVDFAKTVYDYMRADRIVPDKSLLDYLVTSFSHAGKFGVAEDILIARAELCNHRDETVNPFVYNKFLSLLISRNQVDKAVLFFTSRMLKLRGFRPDNFTLNIVMRGMCLTGKVDKAFELFDVMRSLGCHPDLVTYNTLINGL...
XP_057803339.1
MEFWHQRTMISKALSTALFHSQPRSESPNPSPSSTQWFVKVVFTLCARHPQSLAILNSDYFRNNLDPFVAYGVIYLLNSKLDEPNLACSFFSYSRLNLNVMHTESTFDLLLRSLCRANLVDFAKTVYDYMRADRIVPDKSLLDYLVTSFSHAGKFGVAEDILIARAELCNHRDETVNPFVYNKFLSLLISRNQVDKAVLFFTSRMLKLRGFRPDNFTLNIVMRGMCLTGKVDKAFELFDVMRSLGCHPDLVTYNTLINGL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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