当前解析结果
SmilChr01G001519| 统一新 Gene ID | SmilChr01G001519 |
|---|---|
| 名称 | SmilChr01G001519 |
| 描述 | protein KTI12 homolog |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 29104984 - 29107913 / - |
| NCBI Gene ID | LOC131018650 |
|---|---|
| GeneID | 131018650 |
| locus_tag | - |
| NCBI Name | LOC131018650 |
| 原始查询 | SmilChr01G001519 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein KTI12 homolog |
| 产物 | protein KTI12 homolog |
| Arabidopsis | AT1G13870 (DRL1)KTI12-like, chromatin associated protein [Source:NCBI gene (formerly Entrezgene);Acc:837946] identity=70.9; qcov=1; evalue=1.45e-161; confidence=high |
| Rice | Os11g0312340- identity=73.3; qcov=0.285; evalue=1.08e-30; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF01583 (APS_kinase); PF08433 (KTI12); PF13671 (AAA_33) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018650 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803351.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803351.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057803351.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803351.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803351.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:29105361 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B127,B32,C20,C49,C50 |
Chr1:29105494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:29105503 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr1:29105539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,B139 |
Chr1:29105560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B127,B31,B82,B99 |
Chr1:29105574 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B102,B20,C29,D1 |
Chr1:29105585 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr1:29105587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr1:29105598 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr1:29105611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:29105615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,B29,C64,C66,D10 |
Chr1:29105621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057803351.1PF08433
KTI12 1-296 aa
PF01583
APS_kinase 3-117 aa
PF13671
AAA_33 3-145 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803351.1 |
Pfam | PF08433 |
KTI12 | Domain | 1 | 296 | 8.6e-82 | 275.4 | Chromatin associated protein KTI12 |
XP_057803351.1 |
Pfam | PF01583 |
APS_kinase | Domain | 3 | 117 | 0.00017 | 22.4 | Adenylylsulphate kinase |
XP_057803351.1 |
Pfam | PF13671 |
AAA_33 | Domain | 3 | 145 | 2.3e-14 | 54.6 | AAA domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。