Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001525`

染色体: Chr01 坐标: 29209008-29211859 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001525`
名称	SmilChr01G001525
描述	luminal-binding protein 5-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	29209008 - 29211859 / `-`

ID 对照

NCBI Gene ID	`LOC131018674`
GeneID	`131018674`
locus_tag	`-`
NCBI Name	`LOC131018674`
原始查询	`SmilChr01G001525`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	luminal-binding protein 5-like
产物	luminal-binding protein 5-like
Arabidopsis	`AT5G28540` (BIP1) heat shock protein 70 (Hsp 70) family protein [Source:NCBI gene (formerly Entrezgene);Acc:832950] identity=76.1; qcov=0.974; evalue=0; confidence=high
Rice	`Os02g0115900` (OsBiP1) heat shock 70 kDa protein BIP1-like [Source:NCBI gene (formerly Entrezgene);Acc:4328075] identity=74.2; qcov=1; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005788 (endoplasmic reticulum lumen); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0030433 (GO:0030433); GO:0030968 (endoplasmic reticulum unfolded protein response); GO:0031072 (heat shock protein binding); GO:0034620 (cellular response to unfolded protein); GO:0034663 (endoplasmic reticulum chaperone complex); GO:0042026 (protein refolding); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051787 (misfolded protein binding); GO:0140662 (ATP-dependent protein folding chaperone)
KEGG	smil03060 (Protein export - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF00012 (HSP70); PF06723 (MreB_Mbl)
InterPro	-
eggNOG	-
NR	GeneID:131018674

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057803372.1`
2	Endoplasmic reticulum lumen	内质网腔	1.00000	`XP_057803372.1`
3	Nucleus	细胞核	0.00000	`XP_057803372.1`
4	Chromosome	染色体	0.00000	`XP_057803372.1`
5	Centromere	着丝粒	0.00000	`XP_057803372.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:29209116`	`TTG`	`T`	2bp_deletion	frameshift_variant	2	C10,C79
`Chr1:29209116`	`TTG`	`T`	2bp_deletion	CDS_variant	2	C10,C79
`Chr1:29209129`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr1:29209240`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:29209337`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr1:29209860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,B100,B47,D7
`Chr1:29210214`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr1:29210541`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr1:29210688`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr1:29211139`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B32,C45
`Chr1:29211351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B133,C25,C74
`Chr1:29211363`	`TC`	`T`	1bp_deletion	frameshift_variant	5	B122,B26,B28,B55,C39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803372.1

656 aa

328

656

HSP70

MreB_Mbl

PF00012 HSP70 40-643 aa PF06723 MreB_Mbl 153-407 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803372.1`	Pfam	`PF00012`	HSP70	Family	40	643	1.1e-254	847.0	Hsp70 protein
`XP_057803372.1`	Pfam	`PF06723`	MreB_Mbl	Family	153	407	3.5e-18	66.2	MreB/Mbl protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947389.1
ACCTTCAAAACTTCAAATCAACTTTCATCCAAAGCAAAAGAAAGAAAAAAGAAAAAGCATCGAAAATGGCTACAAAATCCATGGTGGCGTTTAACAATGCCGCTTTCTGCATTCTTCTCCTCTTCGTTTCAGATTTTCTCGTAGGCATAGCAATGGCGGCCGAGGGCTCGCAGGGAGACACAGTAATCGGAATTGATTTGGGGACAACATATTCCTGCGTTGGAGTTTACAGAAATGGAAAAGTAGAGATCATCGCCAAC...

CDS

1 records

下载 CDS FASTA

LOC131018674
ATGGCTACAAAATCCATGGTGGCGTTTAACAATGCCGCTTTCTGCATTCTTCTCCTCTTCGTTTCAGATTTTCTCGTAGGCATAGCAATGGCGGCCGAGGGCTCGCAGGGAGACACAGTAATCGGAATTGATTTGGGGACAACATATTCCTGCGTTGGAGTTTACAGAAATGGAAAAGTAGAGATCATCGCCAACGACCAAGGAAACCGAATCACTCCGTCGTGGGTGGCATTCACGGACACCGAGCGCTTGATTGGAGA...

Protein

1 records

下载 Protein FASTA

XP_057803372.1
MATKSMVAFNNAAFCILLLFVSDFLVGIAMAAEGSQGDTVIGIDLGTTYSCVGVYRNGKVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAPLNPERTVFDVKRLIGRKFDDPEVQRDMKMLPYKVVDKDGKPYVEVKMKDGEAKVLSPEEISAMILQRMKETAESYLGKKIKRAVITVPAYFNDAQRQATKDAGTIAGLDVARIINEPTAAAIAYGLDKKGERNVVVFDLGGGTFDVSVLTIENGVFEVLATSGDTH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器