Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001543`

染色体: Chr01 坐标: 29442930-29445692 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001543`
名称	SmilChr01G001543
描述	uncharacterized SmilChr01G001543
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	29442930 - 29445692 / `+`

ID 对照

NCBI Gene ID	`LOC131018752`
GeneID	`131018752`
locus_tag	`-`
NCBI Name	`LOC131018752`
原始查询	`SmilChr01G001543`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840222]; symbol=AT1G33270; hit=AT1G33270; species=arabidopsis; confidence=high
产物	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840222]; symbol=AT1G33270; hit=AT1G33270; species=arabidopsis; confidence=high
Arabidopsis	`AT1G33270` (AT1G33270) Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840222] identity=67.5; qcov=0.844; evalue=2.28e-165; confidence=high
Rice	`Os11g0546300` (OspPLAV) - identity=66.2; qcov=0.847; evalue=2.15e-157; confidence=high
GO	GO:0004806 (triacylglycerol lipase activity); GO:0005737 (cytoplasm); GO:0005811 (lipid droplet); GO:0016020 (membrane); GO:0019433 (triglyceride catabolic process); GO:0055088 (lipid homeostasis)
KEGG	-
Pfam	PF01734 (Patatin)
InterPro	-
eggNOG	-
NR	GeneID:131018752

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057803441.1`
2	Chloroplast membrane	叶绿体膜	0.80000	`XP_057803441.1`
3	Chloroplast thylakoid	类囊体	0.20000	`XP_057803441.1`
4	Nucleus	细胞核	0.00000	`XP_057803441.1`
5	Chromosome	染色体	0.00000	`XP_057803441.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:29443021`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr1:29443123`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B87,C16,C64,D10
`Chr1:29443189`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B94,B97,C1
`Chr1:29443195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B123,B125,B15,B87,C82
`Chr1:29443237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B94,C22
`Chr1:29443290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:29443466`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr1:29443954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr1:29444982`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B123,C19
`Chr1:29445109`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr1:29445120`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B67,C45,C46
`Chr1:29445355`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803441.1

405 aa

202

405

Patatin

PF01734 Patatin 159-320 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803441.1`	Pfam	`PF01734`	Patatin	Domain	159	320	2.7e-18	67.6	Patatin-like phospholipase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947458.1
GGCTGAAAGCGAAAGAAGACAAAAAAAAGAAAAGAAAAAGAAAAAATGAACAAAACTATGCCTTAATTGCAACATTTACAGAATTTTAAATGAAGACAGCGAACCTAATTTCGATGTTTTTGAAGTCACCATTTTCAAACAAGGCCACCCTGTTCTCCCGCAGACCAATCATGGCCTCCTCCCTTTTCCTCCACCCCGCCGGCGCCGCGGCCCCATTTCGCGCCCTCGCTTTCTCCACCAAAGCCACGCCGCCGCAGCAC...

CDS

1 records

下载 CDS FASTA

LOC131018752
ATGAAGACAGCGAACCTAATTTCGATGTTTTTGAAGTCACCATTTTCAAACAAGGCCACCCTGTTCTCCCGCAGACCAATCATGGCCTCCTCCCTTTTCCTCCACCCCGCCGGCGCCGCGGCCCCATTTCGCGCCCTCGCTTTCTCCACCAAAGCCACGCCGCCGCAGCACGAGAGCTTCACGCCGCCGCCGGACCAGGAAAAGAAGTCTTTCGCCGTCGCCACGGGGGAGCTCTTCCTCGGCATCGCGGCTCGGATTCT...

Protein

1 records

下载 Protein FASTA

XP_057803441.1
MKTANLISMFLKSPFSNKATLFSRRPIMASSLFLHPAGAAAPFRALAFSTKATPPQHESFTPPPDQEKKSFAVATGELFLGIAARILNRNGKIVDGGVPAAEMFVGDEKEREWWWRQRRKVGIGAVVEDPVEPDVVWEQGEKDVEAERRRKAVTSPGFSFSAAGLLFPYHLGAARLLIEKGYIKETTPLAGSSAGAIVCAVIASGASMEEALRATKILADDCRLRGTAFRLGAVLRDVLDQFLPDDAHIRSNGRVRVAVT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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