Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001549`

染色体: Chr01 坐标: 29472855-29476884 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001549`
名称	SmilChr01G001549
描述	uncharacterized SmilChr01G001549
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	29472855 - 29476884 / `-`

ID 对照

NCBI Gene ID	`LOC131018786`
GeneID	`131018786`
locus_tag	`-`
NCBI Name	`LOC131018786`
原始查询	`SmilChr01G001549`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os05g0373500; species=rice; confidence=medium
产物	hit=Os05g0373500; species=rice; confidence=medium
Arabidopsis	`AT1G10790` (AT1G10790) hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:837622] identity=40.2; qcov=0.717; evalue=1.06e-50; confidence=medium
Rice	`Os05g0373500` - identity=44.4; qcov=0.74; evalue=1.26e-62; confidence=medium
GO	-
KEGG	-
Pfam	PF23041 (DUF7036)
InterPro	-
eggNOG	-
NR	GeneID:131018786

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057803478.1`
2	Secreted	分泌到胞外	0.60000	`XP_057803481.1`
3	Nucleus	细胞核	0.00000	`XP_057803478.1`
4	Chromosome	染色体	0.00000	`XP_057803478.1`
5	Centromere	着丝粒	0.00000	`XP_057803478.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:29473646`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr1:29473669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C10,C9
`Chr1:29473865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr1:29473872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,B34,B86
`Chr1:29473959`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B98,C2,C48
`Chr1:29474162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr1:29474444`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C19,C82
`Chr1:29474656`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B15,C16,C86,D10
`Chr1:29474701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr1:29474735`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr1:29474871`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C22
`Chr1:29474871`	`TA`	`T`	1bp_deletion	CDS_variant	1	C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803478.1

417 aa

208

417

DUF7036

PF23041 DUF7036 75-166 aa PF23041 DUF7036 200-288 aa

XP_057803481.1

350 aa

175

350

DUF7036

PF23041 DUF7036 8-99 aa PF23041 DUF7036 133-221 aa

XP_057803487.1

350 aa

175

350

DUF7036

PF23041 DUF7036 8-99 aa PF23041 DUF7036 133-221 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803478.1`	Pfam	`PF23041`	DUF7036	Domain	75	166	3.7e-48	162.8	Domain of unknown function (DUF7036)
`XP_057803478.1`	Pfam	`PF23041`	DUF7036	Domain	200	288	3.7e-48	162.8	Domain of unknown function (DUF7036)
`XP_057803481.1`	Pfam	`PF23041`	DUF7036	Domain	8	99	2.1e-48	163.5	Domain of unknown function (DUF7036)
`XP_057803481.1`	Pfam	`PF23041`	DUF7036	Domain	133	221	2.1e-48	163.5	Domain of unknown function (DUF7036)
`XP_057803487.1`	Pfam	`PF23041`	DUF7036	Domain	8	99	2.1e-48	163.5	Domain of unknown function (DUF7036)
`XP_057803487.1`	Pfam	`PF23041`	DUF7036	Domain	133	221	2.1e-48	163.5	Domain of unknown function (DUF7036)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057947495.1
AGAAATTGAAACAAGATCGCACCGTACCGACATCAAGGAGACGTATATGAGAGTTTAACAATTCGACCCCACTGTTATCCCAAAATCAAACCAAAACAAAAAAGGAAAAATAAATCAAATATTTGGAGGCTGAGTATTAAAATGGGAGCATTCAACCACCCTGCACACTTGTCCATCGCCCAGCCCCTACTTCTCTCTCCATTTCATCACCTGCCGATGCAGTGCTGGAAATGGGGAAAGTTGATGATAGGCAATTGCCA...

XM_057947504.1
GCAGGCTCATCAACTTCAAATGCGCCGTCGTTTTCACGCTGACCGTCGCCGCTTTTGTTTCTGCTTTATTTTGCGCTCTTCCTTCCCGCCACAGGCAAGCTGGCTTTGATGCTACGGAATCGATCAAGCTCACTGTTGAAGTCACATTCTATTACTGAATCATTACCATTATTCTTATGTCAGCCACTGTTCAAGCATACTTCAGACTTCACAAACCAGTTTCGAAGCTCATTCAACAGATAGCAAGATTAGAATATGAT...

CDS

3 records

下载 CDS FASTA

LOC131018786
ATGGGGAAAGTTGATGATAGGCAATTGCCAGTGGCGCAGCACCAACAGTCGCCGCCTCCTCTCCGGCGGAGATGCAGGCTCATCAACTTCAAATGCGCCGTCGTTTTCACGCTGACCGTCGCCGCTTTTGTTTCTGCTTTATTTTGCGCTCTTCCTTCCCGCCACAGGCAAGCTGGCTTTGATGCTACGGAATCGATCAAGCTCACTGCCACTGTTCAAGCATACTTCAGACTTCACAAACCAGTTTCGAAGCTCATTCA...

LOC131018786
ATGTCAGCCACTGTTCAAGCATACTTCAGACTTCACAAACCAGTTTCGAAGCTCATTCAACAGATAGCAAGATTAGAATATGATCTTAATGAAGAGATAGGTGTTCCTTCCTCGAAGGTTGCTATCCTATCCATGCACCAAGATGGCAAATCTAACTGGTCCGATGTGGTGTTTGGCTTCCTTCCTGATCCAATTGATATTAGTACGAATCCAGTGTTCTTAAGTCTGCTGAGATCCTCCTTAACTGATCTTTTTTTTCA...

Protein

3 records

下载 Protein FASTA

XP_057803478.1
MGKVDDRQLPVAQHQQSPPPLRRRCRLINFKCAVVFTLTVAAFVSALFCALPSRHRQAGFDATESIKLTATVQAYFRLHKPVSKLIQQIARLEYDLNEEIGVPSSKVAILSMHQDGKSNWSDVVFGFLPDPIDISTNPVFLSLLRSSLTDLFFQQCNLTLNYSLFGDPSSFEILKFPGGITMIPERPAFVMHVPEALFCFSLDSSIHDIKENILELKEQLNSGLHLLPNEVVYIQVTSDHGTTKDPPVTVKASVLSGVGA...

XP_057803481.1
MSATVQAYFRLHKPVSKLIQQIARLEYDLNEEIGVPSSKVAILSMHQDGKSNWSDVVFGFLPDPIDISTNPVFLSLLRSSLTDLFFQQCNLTLNYSLFGDPSSFEILKFPGGITMIPERPAFVMHVPEALFCFSLDSSIHDIKENILELKEQLNSGLHLLPNEVVYIQVTSDHGTTKDPPVTVKASVLSGVGALPQERLKELAHIITGPAENLGLNHSVFGEVKEISLSSFLNHSLRAQTPIPSPSPAPSRGQLYGTGSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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