当前解析结果
SmilChr01G001555| 统一新 Gene ID | SmilChr01G001555 |
|---|---|
| 名称 | SmilChr01G001555 |
| 描述 | putative methylesterase 12, chloroplastic |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 29580482 - 29583450 / - |
| NCBI Gene ID | LOC131005966 |
|---|---|
| GeneID | 131005966 |
| locus_tag | - |
| NCBI Name | LOC131005966 |
| 原始查询 | SmilChr01G001555 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative methylesterase 12, chloroplastic |
| 产物 | putative methylesterase 12%2C chloroplastic |
| Arabidopsis | AT4G09900 (MES12)methyl esterase 12 [Source:NCBI gene (formerly Entrezgene);Acc:826580] identity=65.1; qcov=0.983; evalue=1.26e-111; confidence=high |
| Rice | Os08g0110000- identity=66.3; qcov=0.883; evalue=1.18e-101; confidence=high |
| GO | GO:0009694 (jasmonic acid metabolic process); GO:0009696 (salicylic acid metabolic process); GO:0080030 (methyl indole-3-acetate esterase activity); GO:0080031 (methyl salicylate esterase activity); GO:0080032 (methyl jasmonate esterase activity) |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005966 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057789084.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057789084.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057789084.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057789084.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057789084.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:29581839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:29581840 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | B33 |
Chr1:29581840 |
A |
AG |
1bp_insertion | CDS_variant | 1 | B33 |
Chr1:29581841 |
ACC |
A |
2bp_deletion | frameshift_variant | 1 | B33 |
Chr1:29581841 |
ACC |
A |
2bp_deletion | CDS_variant | 1 | B33 |
Chr1:29582008 |
C |
CT |
1bp_insertion | frameshift_variant | 3 | A6,C43,C79 |
Chr1:29582008 |
C |
CT |
1bp_insertion | CDS_variant | 3 | A6,C43,C79 |
Chr1:29582087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B11,B81 |
Chr1:29582438 |
A |
AC |
1bp_insertion | frameshift_variant | 1 | B140 |
Chr1:29582438 |
A |
AC |
1bp_insertion | CDS_variant | 1 | B140 |
Chr1:29582483 |
TTC |
T |
2bp_deletion | frameshift_variant | 153 | A1,A11,A13,A14,A16,A18,A21,A22,A23,A4,A5,A6,A7,A9,B1,B100,B101,B102,B103,B104,B107,B109,B11,B113,B114,B115,B117,B119,B120,B122,B124,B125,B126,B127,B13,B130,B131,B137,B139,B140,B15,B16,B17,B19,B20,B21,B24,B25,B26,B27,B28,B3,B31,B32,B33,B34,B35,B36,B37,B4,B42,B44,B45,B47,B5,B50,B52,B53,B54,B56,B57,B58,B6,B61,B62,B63,B64,B65,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B8,B81,B82,B85,B86,B87,B88,B91,B93,B96,B98,C10,C11,C13,C14,C16,C18,C20,C24,C25,C26,C27,C28,C31,C32,C33,C36,C38,C39,C40,C41,C44,C45,C46,C48,C49,C50,C52,C53,C55,C57,C59,C6,C60,C61,C62,C63,C68,C69,C71,C72,C78,C8,C86,C87,D1,D10,D11,D3,D4,D5,D6,D7,D9 |
Chr1:29582594 |
G |
A |
EMS_canonical_SNV | stop_gained | 19 | B106,B123,B14,B21,B24,B25,B30,B71,B74,B80,B91,C32,C68,C71,C79,C81,C87,D2,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789084.1PF12146
Hydrolase_4 32-140 aa
PF00561
Abhydrolase_1 33-136 aa
PF12697
Abhydrolase_6 33-151 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789084.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 32 | 140 | 1.7e-07 | 31.6 | Serine aminopeptidase, S33 |
XP_057789084.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 33 | 136 | 1.1e-11 | 45.6 | alpha/beta hydrolase fold |
XP_057789084.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 33 | 151 | 2.4e-16 | 61.7 | Alpha/beta hydrolase family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。