Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001559`

染色体: Chr01 坐标: 29622507-29624733 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001559`
名称	SmilChr01G001559
描述	uncharacterized SmilChr01G001559
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	29622507 - 29624733 / `+`

ID 对照

NCBI Gene ID	`LOC131018852`
GeneID	`131018852`
locus_tag	`-`
NCBI Name	`LOC131018852`
原始查询	`SmilChr01G001559`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ribosomal protein L10 family protein [Source:NCBI gene (formerly Entrezgene);Acc:839109]; symbol=AT1G25260; hit=AT1G25260; species=arabidopsis; confidence=high
产物	Ribosomal protein L10 family protein [Source:NCBI gene (formerly Entrezgene);Acc:839109]; symbol=AT1G25260; hit=AT1G25260; species=arabidopsis; confidence=high
Arabidopsis	`AT1G25260` (AT1G25260) Ribosomal protein L10 family protein [Source:NCBI gene (formerly Entrezgene);Acc:839109] identity=70.2; qcov=1.03; evalue=7.05e-124; confidence=high
Rice	`Os11g0105400` - identity=68.9; qcov=0.969; evalue=4.82e-117; confidence=high
GO	GO:0000027 (ribosomal large subunit assembly); GO:0000956 (nuclear-transcribed mRNA catabolic process); GO:0003723 (RNA binding); GO:0005730 (nucleolus); GO:0006364 (rRNA processing); GO:0030687 (preribosome, large subunit precursor); GO:0042273 (ribosomal large subunit biogenesis)
KEGG	-
Pfam	PF00466 (Ribosomal_L10); PF17777 (RL10P_insert)
InterPro	-
eggNOG	-
NR	GeneID:131018852

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803534.1`
2	Nucleolus	核仁	1.00000	`XP_057803534.1`
3	Cytoplasm	细胞质	0.20000	`XP_057803534.1`
4	Chromosome	染色体	0.00000	`XP_057803534.1`
5	Centromere	着丝粒	0.00000	`XP_057803534.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:29622859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B60,C66,D10
`Chr1:29623199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803534.1

229 aa

114

229

Ribosomal_L10

RL10P_insert

PF00466 Ribosomal_L10 19-120 aa PF17777 RL10P_insert 126-196 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803534.1`	Pfam	`PF00466`	Ribosomal_L10	Family	19	120	1.7e-18	67.3	Ribosomal protein L10
`XP_057803534.1`	Pfam	`PF17777`	RL10P_insert	Domain	126	196	3.4e-22	78.8	Insertion domain in 60S ribosomal protein L10P

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057947551.1
AAAAAGTCGTGCTCTGCCCAAAAACTGACCCAGAAAATACTGGGCTGGGCCAAAAACAAGAGCAGCCCAAAAACTCGCCTTAAAGGAGCGATTTTCCAAATTGGAAGGCTTAACTAGGGTTTTAGCACAACTCTCCTCCATTCACTTCTGCTCGTTGAAGCTCTGCTTGCGAAAACATGCCCAAATCAAAGCGCAATCGCCCAGTCACTCTGTCAAAGACAAAGAAGAAGGGAAAGGAGCACAAAGAAAACGTGTTGAAT...

CDS

1 records

下载 CDS FASTA

LOC131018852
ATGCCCAAATCAAAGCGCAATCGCCCAGTCACTCTGTCAAAGACAAAGAAGAAGGGAAAGGAGCACAAAGAAAACGTGTTGAATACGATACGCGATGCCGTTGACAAGTACGAGTCTGCCTATGTTTTTGCTTTCGAAAACATGAGGAATCTCAAGTTCAAGGGTTTTAAAGAGAAGTTGAAGTCTTCAAGCAGATTTTTTCTTGGATCAAACAAAGTTATGCAAGTTGCATTAGGTAGGTCTGCTTCTGATGAGATTAG...

Protein

1 records

下载 Protein FASTA

XP_057803534.1
MPKSKRNRPVTLSKTKKKGKEHKENVLNTIRDAVDKYESAYVFAFENMRNLKFKGFKEKLKSSSRFFLGSNKVMQVALGRSASDEIRPGLHKISKLLRGDTGLFLTNLPKEEVKRIFDEYEDYDFARTGTVATEKVELNEGPLDQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKQLSPESSRILRLLGIKMATFKLNLICRWSSDDFEIYREGLEDSDIESS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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