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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G001598

染色体: Chr01 坐标: 30131436-30143890 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G001598
名称SmilChr01G001598
描述snRNA-activating protein complex subunit-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向30131436 - 30143890 / +

ID 对照

NCBI Gene IDLOC131019074
GeneID131019074
locus_tag-
NCBI NameLOC131019074
原始查询SmilChr01G001598

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述snRNA-activating protein complex subunit-like
产物snRNA-activating protein complex subunit-like
ArabidopsisAT1G28560 (SRD2)
snRNA activating complex family protein [Source:NCBI gene (formerly Entrezgene);Acc:839756]
identity=48.4; qcov=0.983; evalue=3.45e-122; confidence=high
RiceOs01g0912600
-
identity=54.1; qcov=0.636; evalue=1.3e-98; confidence=high
GOGO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0001006 (RNA polymerase III type 3 promoter sequence-specific DNA binding); GO:0001046 (core promoter sequence-specific DNA binding); GO:0003681 (bent DNA binding); GO:0019185 (snRNA-activating protein complex); GO:0042795 (snRNA transcription by RNA polymerase II); GO:0042796 (snRNA transcription by RNA polymerase III)
KEGG-
PfamPF12251 (SNAPC3)
InterPro-
eggNOG-
NRGeneID:131019074

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057803739.1
2 Nucleoplasm 核质 1.00000 XP_057803783.1
3 Nuclear body 核内小体 0.80000 XP_057803739.1
4 Chromosome 染色体 0.80000 XP_057803783.1
5 Centromere 着丝粒 0.00000 XP_057803739.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:30133299 C T EMS_canonical_SNV CDS_variant 2 B28,C39
Chr1:30133481 GAT G 2bp_deletion frameshift_variant 3 C25,C74,D6
Chr1:30133481 GAT G 2bp_deletion CDS_variant 3 C25,C74,D6
Chr1:30134142 G A EMS_canonical_SNV CDS_variant 1 B13
Chr1:30136796 CT C 1bp_deletion frameshift_variant 2 C15,D9
Chr1:30136796 CT C 1bp_deletion CDS_variant 2 C15,D9
Chr1:30143638 G A EMS_canonical_SNV CDS_variant 2 B108,C23
Chr1:30143730 C T EMS_canonical_SNV CDS_variant 1 B139

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803739.1
456 aa
N
1
228
456
SNAPC3
C
PF12251 SNAPC3 236-453 aa
XP_057803741.1
456 aa
N
1
228
456
SNAPC3
C
PF12251 SNAPC3 236-453 aa
XP_057803746.1
456 aa
N
1
228
456
SNAPC3
C
PF12251 SNAPC3 236-453 aa
XP_057803751.1
455 aa
N
1
228
455
SNAPC3
C
PF12251 SNAPC3 235-452 aa
XP_057803757.1
452 aa
N
1
226
452
SNAPC3
C
PF12251 SNAPC3 232-449 aa
XP_057803763.1
452 aa
N
1
226
452
SNAPC3
C
PF12251 SNAPC3 232-449 aa
XP_057803769.1
451 aa
N
1
226
451
SNAPC3
C
PF12251 SNAPC3 231-448 aa
XP_057803775.1
446 aa
N
1
223
446
SNAPC3
C
PF12251 SNAPC3 226-443 aa
XP_057803783.1
418 aa
N
1
209
418
SNAPC3
C
PF12251 SNAPC3 198-415 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057803739.1 Pfam PF12251 SNAPC3 Family 236 453 1.3e-67 228.0 snRNA-activating protein complex (SNAPc), subunit 3
XP_057803741.1 Pfam PF12251 SNAPC3 Family 236 453 1.3e-67 228.0 snRNA-activating protein complex (SNAPc), subunit 3
XP_057803746.1 Pfam PF12251 SNAPC3 Family 236 453 1.3e-67 228.0 snRNA-activating protein complex (SNAPc), subunit 3
XP_057803751.1 Pfam PF12251 SNAPC3 Family 235 452 1.3e-67 228.0 snRNA-activating protein complex (SNAPc), subunit 3
XP_057803757.1 Pfam PF12251 SNAPC3 Family 232 449 1.2e-67 228.1 snRNA-activating protein complex (SNAPc), subunit 3
XP_057803763.1 Pfam PF12251 SNAPC3 Family 232 449 1.2e-67 228.1 snRNA-activating protein complex (SNAPc), subunit 3
XP_057803769.1 Pfam PF12251 SNAPC3 Family 231 448 1.2e-67 228.1 snRNA-activating protein complex (SNAPc), subunit 3
XP_057803775.1 Pfam PF12251 SNAPC3 Family 226 443 1.3e-67 228.1 snRNA-activating protein complex (SNAPc), subunit 3
XP_057803783.1 Pfam PF12251 SNAPC3 Family 198 415 9e-68 228.6 snRNA-activating protein complex (SNAPc), subunit 3

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XM_057947756.1
CAGACGGCAGTCCGCTCGCCTCCTTCCGGGCTTTACAGCGGCCAACGGGTTTTGTTGACCAAGGGATTTAGTGCACTCCAATAACAAGTTTCCATGATCACTTTCATCAAGATTTATCCTATTGAGGAACGAAACCCTTGCCTCTTCCGCCTTTGCGTTTCCGGAAACCCTTCTCCCAGCGCCGCTTAATCGAATTCTTAGCCTAGCGCCACCCAAGACAGCTTCTCGCGGACGGCTGTCCTACGATGGTGGGTCATGAT...
XM_057947768.1
AGACGGCAGTCCGCTCGCCTCCTTCCGGGCTTTACAGCGGCCAACGGGTTTTGTTGACCAAGGGATTTAGTGCACTCCAATAACAAGTTTCCATGATCACTTTCATCAAGATTTATCCTATTGAGGAACGAAACCCTTGCCTCTTCCGCCTTTGCGTTTCCGGAAACCCTTCTCCCAGCGCCGCTTAATCGAATTCTTAGCCTAGCGCCACCCAAGACAGCTTCTCGCGGACGGCTGTCCTACGATGGTGGGTCATGATG...

CDS

9 records

下载 CDS FASTA
LOC131019074
ATGATCACTTTCATCAAGATTTATCCTATTGAGAGTTTGAAAGAAGAGGTATATGGAGACACTGCACAGGTTTGCGATGAAGATACGTCGGTTGATGAACTCAAAATAATTCAGGAGGATGAGTTAGTCAATAAAGCATTTGAAGAAGCTTTCAAGGTCGATGAACTGGCTATAGGTGATCCACATGTTTCAGAAGAGTGTTTGAGCCCCAGGTCAGAAGAGGACAAGAAGGCTATTGTTTTAAGCAAATCAAACAAAGG...
LOC131019074
ATGGTGGGTCATGATGAGGGTGGAGAAGACCTCTATGTCTCAATTCCGCTTGGTGGTCCAATATATGTCTCTGATCTCGTTGGTCCGCTCACAAGAGTCCCACACTTTGAAACTAGTGTAATTCAAGAACTTGAGGTTTGCTTGTTGAGTTTGAAAGAAGAGGTATATGGAGACACTGCACAGGTTTGCGATGAAGATACGTCGGTTGATGAACTCAAAATAATTCAGGAGGATGAGTTAGTCAATAAAGCATTTGAAGA...

Protein

9 records

下载 Protein FASTA
XP_057803739.1
MVGHDEGGEDLYVSIPLGGPIYVSDLVGPLTRVPHFETSVIQELEVCLLSLKEEVYGDTAQVCDEDTSVDELKIIQEDELVNKAFEEAFKVDELAIGDPHVSEECLSPRSEEDKKAIVLSKSNKGPPGKRKKRKGGSKKNNSFDESYIVKVEQLARIKLKQEEDKACVRLHSFNNSMVPGHGVNAKADKIRPLKSGSVSKKQVKASSTGSDLPVQFPEAVLSFEVYHNKKTSLKTQEFLVLGRQFLTEVKDKIYCLTDEI...
XP_057803741.1
MVGHDEGGEDLYVSIPLGGPIYVSDLVGPLTRVPHFETSVIQELEVCLLSLKEEVYGDTAQVCDEDTSVDELKIIQEDELVNKAFEEAFKVDELAIGDPHVSEECLSPRSEEDKKAIVLSKSNKGPPGKRKKRKGGSKKNNSFDESYIVKVEQLARIKLKQEEDKACVRLHSFNNSMVPGHGVNAKADKIRPLKSGSVSKKQVKASSTGSDLPVQFPEAVLSFEVYHNKKTSLKTQEFLVLGRQFLTEVKDKIYCLTDEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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