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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G001609

染色体: Chr01 坐标: 30250820-30253120 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G001609
名称SmilChr01G001609
描述pentatricopeptide repeat-containing protein At3g04760, chloroplastic-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向30250820 - 30253120 / -

ID 对照

NCBI Gene IDLOC131019036
GeneID131019036
locus_tag-
NCBI NameLOC131019036
原始查询SmilChr01G001609

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At3g04760, chloroplastic-like
产物pentatricopeptide repeat-containing protein At3g04760%2C chloroplastic-like
ArabidopsisAT3G04760 (AT3G04760)
Pentatricopeptide repeat (PPR-like) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819636]
identity=63.6; qcov=0.893; evalue=0; confidence=high
RiceOs02g0565400 (WSL4)
-
identity=41.5; qcov=0.846; evalue=2.68e-131; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131019036

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 0.80000 XP_057803705.1
2 Mitochondrion 线粒体 0.60000 XP_057803705.1
3 Nucleus 细胞核 0.00000 XP_057803705.1
4 Chromosome 染色体 0.00000 XP_057803705.1
5 Centromere 着丝粒 0.00000 XP_057803705.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:30251336 G A EMS_canonical_SNV CDS_variant 4 A11,B123,B30,C56
Chr1:30251441 G A EMS_canonical_SNV CDS_variant 3 B121,B33,B82
Chr1:30251448 C T EMS_canonical_SNV CDS_variant 2 B139,D9
Chr1:30251484 C T EMS_canonical_SNV CDS_variant 2 B121,B33
Chr1:30251623 C T EMS_canonical_SNV CDS_variant 2 A25,B121
Chr1:30251652 G A EMS_canonical_SNV CDS_variant 1 B139
Chr1:30251706 C T EMS_canonical_SNV CDS_variant 5 A4,B13,B139,C21,C65
Chr1:30251745 G A EMS_canonical_SNV CDS_variant 1 D9
Chr1:30251785 C T EMS_canonical_SNV CDS_variant 1 B1
Chr1:30251865 G A EMS_canonical_SNV CDS_variant 1 A16
Chr1:30252060 G A EMS_canonical_SNV CDS_variant 4 A4,B13,B139,C21
Chr1:30252107 C T EMS_canonical_SNV CDS_variant 3 B100,B47,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803705.1
578 aa
N
1
289
578
PPR_1
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_2
PPR_long
PPR_3
PPR_1
TPR_24
PPR_2
PPR
PPR_1
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF12854 PPR_1 128-158 aa PF13812 PPR_3 128-177 aa PF13041 PPR_2 129-178 aa PF01535 PPR 133-162 aa PF13812 PPR_3 153-211 aa PF12854 PPR_1 160-191 aa PF13041 PPR_2 164-212 aa PF01535 PPR 167-194 aa PF23276 TPR_24 181-285 aa PF12854 PPR_1 197-228 aa PF13041 PPR_2 200-249 aa PF01535 PPR 203-233 aa PF17177 PPR_long 216-322 aa PF13812 PPR_3 223-281 aa PF12854 PPR_1 231-261 aa PF01535 PPR 238-268 aa PF13041 PPR_2 239-282 aa PF13041 PPR_2 270-319 aa PF17177 PPR_long 291-417 aa PF13812 PPR_3 293-352 aa PF12854 PPR_1 302-333 aa PF23276 TPR_24 302-400 aa PF13041 PPR_2 306-354 aa PF01535 PPR 308-337 aa PF12854 PPR_1 337-369 aa PF23276 TPR_24 342-434 aa PF01535 PPR 343-373 aa PF13812 PPR_3 365-421 aa PF12854 PPR_1 372-401 aa PF13041 PPR_2 375-422 aa PF01535 PPR 379-408 aa PF17177 PPR_long 396-525 aa PF12854 PPR_1 406-438 aa PF13812 PPR_3 410-456 aa PF13041 PPR_2 410-459 aa PF01535 PPR 413-443 aa PF13812 PPR_3 434-493 aa PF12854 PPR_1 441-474 aa PF13041 PPR_2 445-494 aa PF01535 PPR 448-476 aa PF13812 PPR_3 469-524 aa PF12854 PPR_1 480-509 aa PF13041 PPR_2 480-526 aa PF01535 PPR 483-513 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057803705.1 Pfam PF12854 PPR_1 Repeat 128 158 7.6e-127 413.4 PPR repeat
XP_057803705.1 Pfam PF13812 PPR_3 Repeat 128 177 1.4e-71 237.2 Pentatricopeptide repeat domain
XP_057803705.1 Pfam PF13041 PPR_2 Repeat 129 178 5.6e-151 491.3 PPR repeat family
XP_057803705.1 Pfam PF01535 PPR Repeat 133 162 7.8e-82 264.7 PPR repeat
XP_057803705.1 Pfam PF13812 PPR_3 Repeat 153 211 1.4e-71 237.2 Pentatricopeptide repeat domain
XP_057803705.1 Pfam PF12854 PPR_1 Repeat 160 191 7.6e-127 413.4 PPR repeat
XP_057803705.1 Pfam PF13041 PPR_2 Repeat 164 212 5.6e-151 491.3 PPR repeat family
XP_057803705.1 Pfam PF01535 PPR Repeat 167 194 7.8e-82 264.7 PPR repeat
XP_057803705.1 Pfam PF23276 TPR_24 Repeat 181 285 4.8e-41 140.5 Pentatricopeptide repeat-containing protein
XP_057803705.1 Pfam PF12854 PPR_1 Repeat 197 228 7.6e-127 413.4 PPR repeat
XP_057803705.1 Pfam PF13041 PPR_2 Repeat 200 249 5.6e-151 491.3 PPR repeat family
XP_057803705.1 Pfam PF01535 PPR Repeat 203 233 7.8e-82 264.7 PPR repeat
XP_057803705.1 Pfam PF17177 PPR_long Repeat 216 322 1.8e-30 106.6 Pentacotripeptide-repeat region of PRORP
XP_057803705.1 Pfam PF13812 PPR_3 Repeat 223 281 1.4e-71 237.2 Pentatricopeptide repeat domain
XP_057803705.1 Pfam PF12854 PPR_1 Repeat 231 261 7.6e-127 413.4 PPR repeat
XP_057803705.1 Pfam PF01535 PPR Repeat 238 268 7.8e-82 264.7 PPR repeat
XP_057803705.1 Pfam PF13041 PPR_2 Repeat 239 282 5.6e-151 491.3 PPR repeat family
XP_057803705.1 Pfam PF13041 PPR_2 Repeat 270 319 5.6e-151 491.3 PPR repeat family
XP_057803705.1 Pfam PF17177 PPR_long Repeat 291 417 1.8e-30 106.6 Pentacotripeptide-repeat region of PRORP
XP_057803705.1 Pfam PF13812 PPR_3 Repeat 293 352 1.4e-71 237.2 Pentatricopeptide repeat domain
XP_057803705.1 Pfam PF12854 PPR_1 Repeat 302 333 7.6e-127 413.4 PPR repeat
XP_057803705.1 Pfam PF23276 TPR_24 Repeat 302 400 4.8e-41 140.5 Pentatricopeptide repeat-containing protein
XP_057803705.1 Pfam PF13041 PPR_2 Repeat 306 354 5.6e-151 491.3 PPR repeat family
XP_057803705.1 Pfam PF01535 PPR Repeat 308 337 7.8e-82 264.7 PPR repeat
XP_057803705.1 Pfam PF12854 PPR_1 Repeat 337 369 7.6e-127 413.4 PPR repeat
XP_057803705.1 Pfam PF23276 TPR_24 Repeat 342 434 4.8e-41 140.5 Pentatricopeptide repeat-containing protein
XP_057803705.1 Pfam PF01535 PPR Repeat 343 373 7.8e-82 264.7 PPR repeat
XP_057803705.1 Pfam PF13812 PPR_3 Repeat 365 421 1.4e-71 237.2 Pentatricopeptide repeat domain
XP_057803705.1 Pfam PF12854 PPR_1 Repeat 372 401 7.6e-127 413.4 PPR repeat
XP_057803705.1 Pfam PF13041 PPR_2 Repeat 375 422 5.6e-151 491.3 PPR repeat family
XP_057803705.1 Pfam PF01535 PPR Repeat 379 408 7.8e-82 264.7 PPR repeat
XP_057803705.1 Pfam PF17177 PPR_long Repeat 396 525 1.8e-30 106.6 Pentacotripeptide-repeat region of PRORP
XP_057803705.1 Pfam PF12854 PPR_1 Repeat 406 438 7.6e-127 413.4 PPR repeat
XP_057803705.1 Pfam PF13812 PPR_3 Repeat 410 456 1.4e-71 237.2 Pentatricopeptide repeat domain
XP_057803705.1 Pfam PF13041 PPR_2 Repeat 410 459 5.6e-151 491.3 PPR repeat family
XP_057803705.1 Pfam PF01535 PPR Repeat 413 443 7.8e-82 264.7 PPR repeat
XP_057803705.1 Pfam PF13812 PPR_3 Repeat 434 493 1.4e-71 237.2 Pentatricopeptide repeat domain
XP_057803705.1 Pfam PF12854 PPR_1 Repeat 441 474 7.6e-127 413.4 PPR repeat
XP_057803705.1 Pfam PF13041 PPR_2 Repeat 445 494 5.6e-151 491.3 PPR repeat family
XP_057803705.1 Pfam PF01535 PPR Repeat 448 476 7.8e-82 264.7 PPR repeat
XP_057803705.1 Pfam PF13812 PPR_3 Repeat 469 524 1.4e-71 237.2 Pentatricopeptide repeat domain
XP_057803705.1 Pfam PF12854 PPR_1 Repeat 480 509 7.6e-127 413.4 PPR repeat
XP_057803705.1 Pfam PF13041 PPR_2 Repeat 480 526 5.6e-151 491.3 PPR repeat family
XP_057803705.1 Pfam PF01535 PPR Repeat 483 513 7.8e-82 264.7 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057947722.1
CCTTATCCACAAATATATAATGAAAATGTGAAGGCGATGATGGGTGTGGACAGCAAAAGAAAATAGCTCCACAACACAAGCATATGTGTCGATGAGAGTGAAGAATTGATAAACTAATGACTACAGCTTTCTGCGCTGAATTCTTTCCCCAACGCCTCATCTTCACCCGGCACACCAGAATCCCTCACTACAGCTCCGTTTTCAGATGCAGAGGCAACAGAGATTCCTCAAATCTAGATAGACTCAAGGTCTCCACTGAA...

CDS

1 records

下载 CDS FASTA
LOC131019036
ATGACTACAGCTTTCTGCGCTGAATTCTTTCCCCAACGCCTCATCTTCACCCGGCACACCAGAATCCCTCACTACAGCTCCGTTTTCAGATGCAGAGGCAACAGAGATTCCTCAAATCTAGATAGACTCAAGGTCTCCACTGAAGCCAGGGCCAACCATGTCCCCACCTACATCGATTTCAAAGAAGCCCATTTCTTGAAACTGCTCCACAGATCCTGCAAAGCGGGGAACTACGATGAGGGCCTCTATTTTCTTGAATG...

Protein

1 records

下载 Protein FASTA
XP_057803705.1
MTTAFCAEFFPQRLIFTRHTRIPHYSSVFRCRGNRDSSNLDRLKVSTEARANHVPTYIDFKEAHFLKLLHRSCKAGNYDEGLYFLECMVNLGYKADVILCTKLIKGFFSSKSIDKAAKAMRILERHGEPDIYAYNAFVSGLCKANMIDSANQVLSRMRRRGFAPDIVTYNIMIGSLCNRGKLSLALKMMDELIQEENCKPTVITYTILIEAMILEGGIGEAMKIFDEMLCRGLQPDMYTYNTIIRGMCRGGLMDEAFEFV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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