Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001625`

染色体: Chr01 坐标: 30329325-30331161 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001625`
名称	SmilChr01G001625
描述	uncharacterized SmilChr01G001625
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	30329325 - 30331161 / `-`

ID 对照

NCBI Gene ID	`LOC131019322`
GeneID	`131019322`
locus_tag	`-`
NCBI Name	`LOC131019322`
原始查询	`SmilChr01G001625`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818200]; symbol=AT2G36290; hit=AT2G36290; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818200]; symbol=AT2G36290; hit=AT2G36290; species=arabidopsis; confidence=high
Arabidopsis	`AT2G36290` (AT2G36290) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818200] identity=58.2; qcov=0.973; evalue=4.97e-135; confidence=high
Rice	`Os04g0411800` - identity=49.7; qcov=1.01; evalue=1.43e-119; confidence=high
GO	-
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131019322

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057803866.1`
2	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057803866.1`
3	Lipid droplet	脂滴	0.40000	`XP_057803866.1`
4	Nucleus	细胞核	0.00000	`XP_057803866.1`
5	Chromosome	染色体	0.00000	`XP_057803866.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:30329513`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B38,B39,C54
`Chr1:30329551`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr1:30329631`	`G`	`A`	EMS_canonical_SNV	stop_gained	7	B112,B126,B88,C16,C19,C6,C86
`Chr1:30329793`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B136,C11,C43,C69,C71
`Chr1:30329880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,B64
`Chr1:30329897`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B24,B70,C47,C85
`Chr1:30329931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A15,D10
`Chr1:30330459`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B112,B78,C16,C43
`Chr1:30330468`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:30330627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B110,B112,B126,B88,C6
`Chr1:30330641`	`CT`	`C`	1bp_deletion	frameshift_variant	11	B108,B120,B2,B66,B95,C17,C2,C23,C34,C76,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803866.1

332 aa

166

332

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 56-174 aa PF00561 Abhydrolase_1 60-161 aa PF12697 Abhydrolase_6 60-326 aa

XP_057803867.1

332 aa

166

332

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 56-174 aa PF00561 Abhydrolase_1 60-161 aa PF12697 Abhydrolase_6 60-326 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803866.1`	Pfam	`PF12146`	Hydrolase_4	Domain	56	174	7.9e-09	35.9	Serine aminopeptidase, S33
`XP_057803866.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	60	161	8.4e-17	62.4	alpha/beta hydrolase fold
`XP_057803866.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	60	326	2.2e-17	65.1	Alpha/beta hydrolase family
`XP_057803867.1`	Pfam	`PF12146`	Hydrolase_4	Domain	56	174	7.9e-09	35.9	Serine aminopeptidase, S33
`XP_057803867.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	60	161	8.4e-17	62.4	alpha/beta hydrolase fold
`XP_057803867.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	60	326	2.2e-17	65.1	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057947883.1
ATGTGACAGGCAGCCGGGGCCTATATTTATAGACAAAGTTTATTTCAATTTCTTGAATTCCTAAATAGCATGTTCTGGGCCTCGTAACTTTTTGTCCATTTAATCTTTCGAGTGTTTAGACAAACATAATTAATTGATTTTTCTTCTCATTCTCACTTCTTTCATCTTGATCAGCTATACATGTATTGGAAAGTAATCATCGCATTGTTGTTGGCGTTTCTAGCGTGGGTGTATAAGGCCGTCCGCCCTCCGCCACCGCG...

XM_057947884.1
CCTAAATAGCATGTTCTGGGCCTCGTAACTTTTTGTCCATTTAATCTTTCGAGTGTTTAGACAAACATAATTAATTGATTTTTCTTCTCATTCTCACTTCTTTCATCTTGATCAGGTAACTCTCTCTTCATTCTTGCTTATACGTGAATATATTACTTCAACTCTGTTTCTGTTCATGGTGCCCTGTTTCTTGAAATTATTCTTGCGGTTTGACACTAATCCCAACGCTATACATGTATTGGAAAGTAATCATCGCATTG...

CDS

2 records

下载 CDS FASTA

LOC131019322
ATGTATTGGAAAGTAATCATCGCATTGTTGTTGGCGTTTCTAGCGTGGGTGTATAAGGCCGTCCGCCCTCCGCCACCGCGGCCCCACGGCGTCTCGGGGCCAAGAATCAAGCTTCGAGATGGGAGATTCTTGTCCTACAAGGAGTATGGAGTCCCTAAAGAGAGTGCCAAATACAAAATCATCTTGGTTCATGGCTTTGGCTCTTGCAAACATGAAGATGCCTTTAGTCAATCGGAGCTGGTGGAGAAGCTGGGCGTACA...

Protein

2 records

下载 Protein FASTA

XP_057803866.1
MYWKVIIALLLAFLAWVYKAVRPPPPRPHGVSGPRIKLRDGRFLSYKEYGVPKESAKYKIILVHGFGSCKHEDAFSQSELVEKLGVHMVSFDRPGYGESDPDPKRTLKSVALDIAELGDELGFGPKFYVVGCSMGGQLVWGCLKYIPHRLAGAALLAPVINCWWPSFPPKLSAAAFRQQFPEDQWASRVARYAPWLVYWWNTQKWFPPNSVIAGRANFSAPDLEILSKRDLSSIDMEYPTQQGVYESLHRDMIVGFGRWD...

XP_057803867.1
MYWKVIIALLLAFLAWVYKAVRPPPPRPHGVSGPRIKLRDGRFLSYKEYGVPKESAKYKIILVHGFGSCKHEDAFSQSELVEKLGVHMVSFDRPGYGESDPDPKRTLKSVALDIAELGDELGFGPKFYVVGCSMGGQLVWGCLKYIPHRLAGAALLAPVINCWWPSFPPKLSAAAFRQQFPEDQWASRVARYAPWLVYWWNTQKWFPPNSVIAGRANFSAPDLEILSKRDLSSIDMEYPTQQGVYESLHRDMIVGFGRWD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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