当前解析结果
SmilChr01G001645| 统一新 Gene ID | SmilChr01G001645 |
|---|---|
| 名称 | SmilChr01G001645 |
| 描述 | pleiotropic drug resistance protein 2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 30513122 - 30520065 / + |
| NCBI Gene ID | LOC131019602 |
|---|---|
| GeneID | 131019602 |
| locus_tag | - |
| NCBI Name | LOC131019602 |
| 原始查询 | SmilChr01G001645 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pleiotropic drug resistance protein 2-like |
| 产物 | pleiotropic drug resistance protein 2-like |
| Arabidopsis | AT1G66950 (ABCG39)pleiotropic drug resistance 11 [Source:NCBI gene (formerly Entrezgene);Acc:843013] identity=70.2; qcov=0.99; evalue=0; confidence=high |
| Rice | Os07g0522500 (ABCG43)- identity=60.3; qcov=0.991; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF08370 (PDR_assoc); PF14510 (ABC_trans_N); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019602 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057804172.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057804172.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057804172.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057804172.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057804172.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:30513813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B62,C26 |
Chr1:30513887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,A18,B90,B92,B93 |
Chr1:30513938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,A18,B90,B92,B93 |
Chr1:30514336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B63,B74 |
Chr1:30514930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:30515134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr1:30515212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr1:30515254 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B62,C26 |
Chr1:30515285 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr1:30515683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr1:30515788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr1:30515959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804172.1PF14510
ABC_trans_N 121-169 aa
PF00005
ABC_tran 195-376 aa
PF19055
ABC2_membrane_7 410-461 aa
PF01061
ABC2_membrane 531-743 aa
PF08370
PDR_assoc 748-814 aa
PF00005
ABC_tran 896-1048 aa
PF01061
ABC2_membrane 1194-1406 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804172.1 |
Pfam | PF14510 |
ABC_trans_N | Domain | 121 | 169 | 2.8e-09 | 37.9 | ABC-transporter N-terminal |
XP_057804172.1 |
Pfam | PF00005 |
ABC_tran | Domain | 195 | 376 | 6.3e-38 | 131.2 | ABC transporter |
XP_057804172.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 410 | 461 | 3.2e-17 | 63.2 | ABC-2 type transporter |
XP_057804172.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 531 | 743 | 7.7e-105 | 349.8 | ABC-2 type transporter |
XP_057804172.1 |
Pfam | PF08370 |
PDR_assoc | Family | 748 | 814 | 1.8e-22 | 79.6 | Plant PDR ABC transporter associated |
XP_057804172.1 |
Pfam | PF00005 |
ABC_tran | Domain | 896 | 1048 | 6.3e-38 | 131.2 | ABC transporter |
XP_057804172.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 1194 | 1406 | 7.7e-105 | 349.8 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。