Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001651`

染色体: Chr01 坐标: 30577893-30583645 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001651`
名称	SmilChr01G001651
描述	uncharacterized SmilChr01G001651
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	30577893 - 30583645 / `+`

ID 对照

NCBI Gene ID	`LOC131019653`
GeneID	`131019653`
locus_tag	`-`
NCBI Name	`LOC131019653`
原始查询	`SmilChr01G001651`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA polymerase II degradation factor [Source:NCBI gene (formerly Entrezgene);Acc:835444]; symbol=AT5G53620; hit=AT5G53620; species=arabidopsis; confidence=medium
产物	RNA polymerase II degradation factor [Source:NCBI gene (formerly Entrezgene);Acc:835444]; symbol=AT5G53620; hit=AT5G53620; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G53620` (AT5G53620) RNA polymerase II degradation factor [Source:NCBI gene (formerly Entrezgene);Acc:835444] identity=44.7; qcov=0.933; evalue=6.83e-171; confidence=medium
Rice	`Os08g0543600` - identity=41.7; qcov=0.94; evalue=3.5e-161; confidence=medium
GO	-
KEGG	-
Pfam	PF24851 (DUF7725)
InterPro	-
eggNOG	-
NR	GeneID:131019653

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057804227.1`
2	Cytoplasm	细胞质	0.80000	`XP_057804235.1`
3	Trans-golgi network	Trans-golgi network	0.40000	`XP_057804227.1`
4	Clathrin-coated vesicle	Clathrin-coated vesicle	0.20000	`XP_057804227.1`
5	Endocytic vesicle	Endocytic vesicle	0.20000	`XP_057804235.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:30578207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr1:30578222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B46,B94,C30,C49,D7
`Chr1:30578255`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B46,B94,C30,C49,D7
`Chr1:30578834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr1:30579812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:30580190`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr1:30580588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr1:30581747`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr1:30581926`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr1:30581932`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr1:30582047`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr1:30582057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804227.1

814 aa

407

814

DUF7725

PF24851 DUF7725 632-702 aa

XP_057804235.1

805 aa

402

805

DUF7725

PF24851 DUF7725 623-693 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804227.1`	Pfam	`PF24851`	DUF7725	Domain	632	702	1.5e-34	118.5	Domain of unknown function (DUF7725)
`XP_057804235.1`	Pfam	`PF24851`	DUF7725	Domain	623	693	1.4e-34	118.5	Domain of unknown function (DUF7725)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948252.1
CGCGTACATACCCGCGTTTGGGAACGACTTTTACTATTCTAAGCCCCTCTAAAACCCTTAATTCACAACAAAACCCCAAAATCTGCCGCAAAAACGTACAAAAATTTGTTGGATTCAGTTCGTCGTTACTATCCCTCACCATACTTCCCATTTCCATCTCCATTTTTTGAGTCACTCACTCTGATTTTCTCTCTCTACTTCTCTACTTTTGAGGTTAGGCTTTTGATGACAAATTAGGGTTTTTTTAAGGTAAAAGGTGT...

XM_057948244.1
CGTACATACCCGCGTTTGGGAACGACTTTTACTATTCTAAGCCCCTCTAAAACCCTTAATTCACAACAAAACCCCAAAATCTGCCGCAAAAACGTACAAAAATTTGTTGGATTCAGTTCGTCGTTACTATCCCTCACCATACTTCCCATTTCCATCTCCATTTTTTGAGTCACTCACTCTGATTTTCTCTCTCTACTTCTCTACTTTTGAGGTTAGGCTTTTGATGACAAATTAGGGTTTTTTTAAGGTAAAAGGTGTGG...

CDS

2 records

下载 CDS FASTA

LOC131019653
ATGGAGGCCTCCCCCGGTGCTACTGCCGCCGTGCGCAATGGCGGGGTTGCTATGCCGCCGATGGCGGCTTCTTCCTCATTTGAACCTTCCCGCGAGGAGTGGCGCGTCGTATCTGAGCAATCGGTTAGAAGTTCCGGTAACGAGGAGTTGGAGCGCTCAAAAGTTGGTCGATCCGACGAGAGATTAATATACGAGGTGCAACATGGCAGAGGGTCACTCGATGTTGATTTTTGCTCGATTAATGTTGATGGGGGTCTGGA...

Protein

2 records

下载 Protein FASTA

XP_057804227.1
MEASPGATAAVRNGGVAMPPMAASSSFEPSREEWRVVSEQSVRSSGNEELERSKVGRSDERLIYEVQHGRGSLDVDFCSINVDGGLDNDILQKRIRNLVEKREELQNMELELRAQISARSEVVRLHNTFDGQIKEHMNANVKLQEQLHEKEQKIHELERRMDEKERELHAIRLDNEAAWAKEDLLREQSKEIQSYRRERDNVEAERAQHIKQIHDLQEHIQEKERQFLELQEQHRIAQETVIFKDEQIREAQTWISRAQE...

XP_057804235.1
MEASPGATAAVRNGGVAMPPMAASSSFEPSREEWRVVSEQSVRSSGNEELERSKVGRSDERLIYEVQHGRGSLDVDFCSINVDGGLDNDILQKRIRNLVEKREELQNMELELRAQISARSEVVRLHNTFDGQIKEHMNANVKLQEQLHEKEQKIHELERRMDEKERELHAIRLDNEAAWAKEDLLREQSKEIQSYRRERDNVEAERAQHIKQIHDLQEHIQEKERQFLELQEQHRIAQETVIFKDEQIREAQTWISRAQE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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