Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001661`

染色体: Chr01 坐标: 30688649-30694216 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001661`
名称	SmilChr01G001661
描述	polyadenylate-binding protein-interacting protein 12-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	30688649 - 30694216 / `-`

ID 对照

NCBI Gene ID	`LOC131019755`
GeneID	`131019755`
locus_tag	`-`
NCBI Name	`LOC131019755`
原始查询	`SmilChr01G001661`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	polyadenylate-binding protein-interacting protein 12-like
产物	polyadenylate-binding protein-interacting protein 12-like
Arabidopsis	`AT4G10610` (CID12) CTC-interacting domain 12 [Source:NCBI gene (formerly Entrezgene);Acc:826653] identity=69.4; qcov=0.803; evalue=7.28e-129; confidence=high
Rice	`Os08g0116400` (P0470F10.8-1) - identity=74.2; qcov=0.752; evalue=1.75e-127; confidence=high
GO	GO:0003723 (RNA binding)
KEGG	-
Pfam	PF00076 (RRM_1); PF07145 (PAM2)
InterPro	-
eggNOG	-
NR	GeneID:131019755

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057804326.1`
2	Nucleus	细胞核	0.80000	`XP_057804326.1`
3	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.80000	`XP_057804326.1`
4	Cytoplasmic granule	细胞质颗粒	0.60000	`XP_057804353.1`
5	P-body	P-body	0.60000	`XP_057804327.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:30692179`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr1:30692334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr1:30692590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A25,D7
`Chr1:30693202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B41,B49,C34
`Chr1:30693382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B85,C41,D3
`Chr1:30693581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804326.1

380 aa

190

380

PAM2

RRM_1

PF07145 PAM2 98-113 aa PF00076 RRM_1 197-259 aa PF00076 RRM_1 294-361 aa

XP_057804327.1

379 aa

190

379

PAM2

RRM_1

PF07145 PAM2 98-113 aa PF00076 RRM_1 196-258 aa PF00076 RRM_1 293-360 aa

XP_057804328.1

367 aa

184

367

PAM2

RRM_1

PF07145 PAM2 98-113 aa PF00076 RRM_1 184-246 aa PF00076 RRM_1 281-348 aa

XP_057804329.1

366 aa

183

366

PAM2

RRM_1

PF07145 PAM2 98-113 aa PF00076 RRM_1 183-245 aa PF00076 RRM_1 280-347 aa

XP_057804336.1

344 aa

172

344

PAM2

RRM_1

PF07145 PAM2 98-113 aa PF00076 RRM_1 197-259 aa PF00076 RRM_1 294-340 aa

XP_057804344.1

343 aa

172

343

PAM2

RRM_1

PF07145 PAM2 98-113 aa PF00076 RRM_1 196-258 aa PF00076 RRM_1 293-339 aa

XP_057804353.1

331 aa

166

331

PAM2

RRM_1

PF07145 PAM2 98-113 aa PF00076 RRM_1 184-246 aa PF00076 RRM_1 281-327 aa

XP_057804363.1

330 aa

165

330

PAM2

RRM_1

PF07145 PAM2 98-113 aa PF00076 RRM_1 183-245 aa PF00076 RRM_1 280-326 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804326.1`	Pfam	`PF07145`	PAM2	Motif	98	113	1.1e-06	28.6	Ataxin-2 C-terminal region
`XP_057804326.1`	Pfam	`PF00076`	RRM_1	Domain	197	259	3.4e-23	82.0	RNA recognition motif
`XP_057804326.1`	Pfam	`PF00076`	RRM_1	Domain	294	361	3.4e-23	82.0	RNA recognition motif
`XP_057804327.1`	Pfam	`PF07145`	PAM2	Motif	98	113	1.1e-06	28.6	Ataxin-2 C-terminal region
`XP_057804327.1`	Pfam	`PF00076`	RRM_1	Domain	196	258	3.4e-23	82.0	RNA recognition motif
`XP_057804327.1`	Pfam	`PF00076`	RRM_1	Domain	293	360	3.4e-23	82.0	RNA recognition motif
`XP_057804328.1`	Pfam	`PF07145`	PAM2	Motif	98	113	1.1e-06	28.6	Ataxin-2 C-terminal region
`XP_057804328.1`	Pfam	`PF00076`	RRM_1	Domain	184	246	3.1e-23	82.2	RNA recognition motif
`XP_057804328.1`	Pfam	`PF00076`	RRM_1	Domain	281	348	3.1e-23	82.2	RNA recognition motif
`XP_057804329.1`	Pfam	`PF07145`	PAM2	Motif	98	113	1.1e-06	28.6	Ataxin-2 C-terminal region
`XP_057804329.1`	Pfam	`PF00076`	RRM_1	Domain	183	245	3e-23	82.2	RNA recognition motif
`XP_057804329.1`	Pfam	`PF00076`	RRM_1	Domain	280	347	3e-23	82.2	RNA recognition motif
`XP_057804336.1`	Pfam	`PF07145`	PAM2	Motif	98	113	1e-06	28.7	Ataxin-2 C-terminal region
`XP_057804336.1`	Pfam	`PF00076`	RRM_1	Domain	197	259	2.2e-19	69.8	RNA recognition motif
`XP_057804336.1`	Pfam	`PF00076`	RRM_1	Domain	294	340	2.2e-19	69.8	RNA recognition motif
`XP_057804344.1`	Pfam	`PF07145`	PAM2	Motif	98	113	1e-06	28.7	Ataxin-2 C-terminal region
`XP_057804344.1`	Pfam	`PF00076`	RRM_1	Domain	196	258	2.2e-19	69.8	RNA recognition motif
`XP_057804344.1`	Pfam	`PF00076`	RRM_1	Domain	293	339	2.2e-19	69.8	RNA recognition motif
`XP_057804353.1`	Pfam	`PF07145`	PAM2	Motif	98	113	9.9e-07	28.7	Ataxin-2 C-terminal region
`XP_057804353.1`	Pfam	`PF00076`	RRM_1	Domain	184	246	2e-19	70.0	RNA recognition motif
`XP_057804353.1`	Pfam	`PF00076`	RRM_1	Domain	281	327	2e-19	70.0	RNA recognition motif
`XP_057804363.1`	Pfam	`PF07145`	PAM2	Motif	98	113	9.8e-07	28.8	Ataxin-2 C-terminal region
`XP_057804363.1`	Pfam	`PF00076`	RRM_1	Domain	183	245	2e-19	70.0	RNA recognition motif
`XP_057804363.1`	Pfam	`PF00076`	RRM_1	Domain	280	326	2e-19	70.0	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057948343.1
CGATCCGAAGAGAAACCTCAATTGTCCACTTTTCTCTCTCTAAAACCCACCCAAAAAAAAAAAAGCCACAGCTAAAACGGACGATCCGAAGAGAAACCTCAATTACCCATTTTTCTCTCTCTAAAACCCTCTTCTGTCTGTGTCTATATACTTGCACTATTCCTTCTCTCTCTGTACATATCTTCTCCTTGCAGACTCAGTAAAATATTCTTACAAATACTATAAAATAAACCCAAAAATTAAAAGGAAAAGGCGTGCTC...

XM_057948346.1
GAAACCTCAATTGTCCACTTTTCTCTCTCTAAAACCCACCCAAAAAAAAAAAAGCCACAGCTAAAACGGACGATCCGAAGAGAAACCTCAATTACCCATTTTTCTCTCTCTAAAACCCTCTTCTGTCTGTGTCTATATACTTGCACTATTCCTTCTCTCTCTGTACATATCTTCTCCTTGCAGACTCAGTAAAATATTCTTACAAATACTATAAAATAAACCCAAAAATTAAAAGGAAAAGGCGTGCTCTGTTTTTTGCC...

CDS

8 records

下载 CDS FASTA

LOC131019755
ATGGCCGTGGTGGAGAATGCCGGTGCTAACGCGATTACGTCATCGAATCGCGATAACGACGCCGCGGATCACCACCAGCAGTCGACGAACAAAGCCGCGGCGGCGGCAGCGGCTAACGGCCAGTCAACAAAGCCCGCTGATCAGAGTTTCCTTCTGGTGCCGCAGAAGATACCTAACGGCCACCATCAGCTGCCCGTCAACGGAAATGGGGTCTCTTTGGAGAAGAAGTTGGATGGGGAGATAGATGATGGAGGGGAAGG...

Protein

8 records

下载 Protein FASTA

XP_057804326.1
MAVVENAGANAITSSNRDNDAADHHQQSTNKAAAAAAANGQSTKPADQSFLLVPQKIPNGHHQLPVNGNGVSLEKKLDGEIDDGGEGFKKEMRDLEEMLSKLNPMAKEFVPPSLSAFGGGGGPHKLLVPPHAAAVAAAAAGHFGFNATGFVMQQQVNSGVPTANSFRRKKNGFVNGKRRMNSRTSMAQREDVIRRTVYVSDIDHQVTEEQLAALFINCGQVVDCRVCGDPNSVLRFAFIEFTDEEGARNALSLAGTMLGF...

XP_057804327.1
MAVVENAGANAITSSNRDNDAADHHQQSTNKAAAAAAANGQSTKPADQSFLLVPQKIPNGHHQLPVNGNGVSLEKKLDGEIDDGGEGFKKEMRDLEEMLSKLNPMAKEFVPPSLSAFGGGGGPHKLLVPPHAAAVAAAAAGHFGFNATGFVMQQQVNSGVPTANSFRRKNGFVNGKRRMNSRTSMAQREDVIRRTVYVSDIDHQVTEEQLAALFINCGQVVDCRVCGDPNSVLRFAFIEFTDEEGARNALSLAGTMLGFY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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