当前解析结果
SmilChr01G001666| 统一新 Gene ID | SmilChr01G001666 |
|---|---|
| 名称 | SmilChr01G001666 |
| 描述 | 6,7,8-trihydroxycoumarin synthase-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 30748494 - 30750905 / - |
| NCBI Gene ID | LOC131019833 |
|---|---|
| GeneID | 131019833 |
| locus_tag | - |
| NCBI Name | LOC131019833 |
| 原始查询 | SmilChr01G001666 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 6,7,8-trihydroxycoumarin synthase-like |
| 产物 | 6%2C7%2C8-trihydroxycoumarin synthase-like |
| Arabidopsis | AT4G31500 (CYP83B1)cytochrome P450, family 83, subfamily B, polypeptide 1 [Source:NCBI gene (formerly Entrezgene);Acc:829277] identity=48.1; qcov=0.976; evalue=1.44e-162; confidence=high |
| Rice | Os09g0275400- identity=38.9; qcov=0.956; evalue=1.3e-116; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019833 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057804429.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057804429.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804429.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804429.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804429.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:30748632 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A14,A9,D1,D8 |
Chr1:30748691 |
CA |
C |
1bp_deletion | frameshift_variant | 2 | B131,C37 |
Chr1:30748691 |
CA |
C |
1bp_deletion | CDS_variant | 2 | B131,C37 |
Chr1:30748705 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | B115,C45 |
Chr1:30748705 |
TA |
T |
1bp_deletion | CDS_variant | 2 | B115,C45 |
Chr1:30748737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,C27,C44 |
Chr1:30748739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,C45 |
Chr1:30748775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B117,C27 |
Chr1:30748789 |
C |
CT |
1bp_insertion | frameshift_variant | 7 | A21,A25,B113,B28,B50,B72,C18 |
Chr1:30748866 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr1:30748979 |
G |
GGC |
2bp_insertion | frameshift_variant | 1 | C64 |
Chr1:30748979 |
G |
GGC |
2bp_insertion | CDS_variant | 1 | C64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804429.1PF00067
p450 26-490 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804429.1 |
Pfam | PF00067 |
p450 | Domain | 26 | 490 | 4.1e-104 | 349.6 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。