Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001678`

染色体: Chr01 坐标: 30978791-30985278 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001678`
名称	SmilChr01G001678
描述	uncharacterized SmilChr01G001678
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	30978791 - 30985278 / `-`

ID 对照

NCBI Gene ID	`LOC131019918`
GeneID	`131019918`
locus_tag	`-`
NCBI Name	`LOC131019918`
原始查询	`SmilChr01G001678`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os02g0823800; species=rice; confidence=medium
产物	hit=Os02g0823800; species=rice; confidence=medium
Arabidopsis	`-` -
Rice	`Os02g0823800` - identity=41.7; qcov=0.968; evalue=0; confidence=medium
GO	GO:0000184 (nuclear-transcribed mRNA catabolic process, nonsense-mediated decay)
KEGG	-
Pfam	PF10220 (Smg8_Smg9)
InterPro	-
eggNOG	-
NR	GeneID:131019918

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057804529.1`
2	Cytoplasm	细胞质	0.20000	`XP_057804529.1`
3	Cytosol	细胞质基质	0.20000	`XP_057804529.1`
4	Chromosome	染色体	0.00000	`XP_057804529.1`
5	Centromere	着丝粒	0.00000	`XP_057804529.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:30980091`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B60,C17
`Chr1:30980125`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C10,C79
`Chr1:30980167`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:30980168`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr1:30980665`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C15,C48
`Chr1:30981477`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C60,D4
`Chr1:30982071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B60,C17
`Chr1:30982304`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr1:30982383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A6,B137,B79,B8
`Chr1:30982397`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:30982474`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B139,C61
`Chr1:30982677`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804529.1

1210 aa

605

1210

Smg8_Smg9

PF10220 Smg8_Smg9 33-180 aa PF10220 Smg8_Smg9 514-665 aa PF10220 Smg8_Smg9 1056-1182 aa

XP_057804533.1

1210 aa

605

1210

Smg8_Smg9

PF10220 Smg8_Smg9 33-180 aa PF10220 Smg8_Smg9 514-665 aa PF10220 Smg8_Smg9 1056-1182 aa

XP_057804541.1

1210 aa

605

1210

Smg8_Smg9

PF10220 Smg8_Smg9 33-180 aa PF10220 Smg8_Smg9 514-665 aa PF10220 Smg8_Smg9 1056-1182 aa

XP_057804548.1

1210 aa

605

1210

Smg8_Smg9

PF10220 Smg8_Smg9 33-180 aa PF10220 Smg8_Smg9 514-665 aa PF10220 Smg8_Smg9 1056-1182 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804529.1`	Pfam	`PF10220`	Smg8_Smg9	Family	33	180	6.4e-73	247.2	Smg8_Smg9
`XP_057804529.1`	Pfam	`PF10220`	Smg8_Smg9	Family	514	665	6.4e-73	247.2	Smg8_Smg9
`XP_057804529.1`	Pfam	`PF10220`	Smg8_Smg9	Family	1056	1182	6.4e-73	247.2	Smg8_Smg9
`XP_057804533.1`	Pfam	`PF10220`	Smg8_Smg9	Family	33	180	6.4e-73	247.2	Smg8_Smg9
`XP_057804533.1`	Pfam	`PF10220`	Smg8_Smg9	Family	514	665	6.4e-73	247.2	Smg8_Smg9
`XP_057804533.1`	Pfam	`PF10220`	Smg8_Smg9	Family	1056	1182	6.4e-73	247.2	Smg8_Smg9
`XP_057804541.1`	Pfam	`PF10220`	Smg8_Smg9	Family	33	180	6.4e-73	247.2	Smg8_Smg9
`XP_057804541.1`	Pfam	`PF10220`	Smg8_Smg9	Family	514	665	6.4e-73	247.2	Smg8_Smg9
`XP_057804541.1`	Pfam	`PF10220`	Smg8_Smg9	Family	1056	1182	6.4e-73	247.2	Smg8_Smg9
`XP_057804548.1`	Pfam	`PF10220`	Smg8_Smg9	Family	33	180	6.4e-73	247.2	Smg8_Smg9
`XP_057804548.1`	Pfam	`PF10220`	Smg8_Smg9	Family	514	665	6.4e-73	247.2	Smg8_Smg9
`XP_057804548.1`	Pfam	`PF10220`	Smg8_Smg9	Family	1056	1182	6.4e-73	247.2	Smg8_Smg9

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057948546.1
TTCTCCACCTGTTTGGGAGCCGCATACACTTGAACCAACCCGACCCGTCGGATATAGTCGTGGCCCGTTCGGAGCTACAAACACAAACGCAAAGAGAGAGCAGCCGGCGGCGGCCCCCAATTCCAATGGAAACCCAGTCCCACTCAATCCGAGTGCTCGTTCGCCCCCCGCCACCCCCCGCCCCCCTCCCTCCGCAGCCCCCGCCAACGCCTCCGCCCGGCGTCGTCGTGGTCGGATTCATAGGGAGGCGCCACCACGAC...

XM_057948565.1
TTCTCCACCTGTTTGGGAGCCGCATACACTTGAACCAACCCGACCCGTCGGATATAGTCGTGGCCCGTTCGGAGCTACAAACACAAACGCAAAGAGAGAGCAGCCGGCGGCGGCCCCCAATTCCAATGGAAACCCAGTCCCACTCAATCCGAGTGCTCGTTCGCCCCCCGCCACCCCCCGCCCCCCTCCCTCCGCAGCCCCCGCCAACGCCTCCGCCCGGCGTCGTCGTGGTCGGATTCATAGGGAGGCGCCACCACGAC...

CDS

4 records

下载 CDS FASTA

LOC131019918
ATGGAAACCCAGTCCCACTCAATCCGAGTGCTCGTTCGCCCCCCGCCACCCCCCGCCCCCCTCCCTCCGCAGCCCCCGCCAACGCCTCCGCCCGGCGTCGTCGTGGTCGGATTCATAGGGAGGCGCCACCACGACGTCGCTCATCTCATCAACAAAATCGCCGACTCTTATGCCTTCGGCTCCGGCGGTTTGGATACTCCGCTTCGCTTCGAACCCGAGAGGATCGACTCGGAGATGAGGAGATGGTTCGAGAGCAGGAA...

Protein

4 records

下载 Protein FASTA

XP_057804529.1
METQSHSIRVLVRPPPPPAPLPPQPPPTPPPGVVVVGFIGRRHHDVAHLINKIADSYAFGSGGLDTPLRFEPERIDSEMRRWFESRNLSFYHDQDKGILYLQFSMLDCTVAEAMLSEGRMGFESVLEDRELGDLKGFIFMFTVCHIVILIQEGSRFDTQLLKKFRVLQAAKHSIVPFIRSQNISSIASRPRSSAQSRIPATGSSFNNASPGKIGIQNRNASANAVMSGLGSYTSLLPGQCTPVVLFVFVDDFSEIYLSGN...

XP_057804533.1
METQSHSIRVLVRPPPPPAPLPPQPPPTPPPGVVVVGFIGRRHHDVAHLINKIADSYAFGSGGLDTPLRFEPERIDSEMRRWFESRNLSFYHDQDKGILYLQFSMLDCTVAEAMLSEGRMGFESVLEDRELGDLKGFIFMFTVCHIVILIQEGSRFDTQLLKKFRVLQAAKHSIVPFIRSQNISSIASRPRSSAQSRIPATGSSFNNASPGKIGIQNRNASANAVMSGLGSYTSLLPGQCTPVVLFVFVDDFSEIYLSGN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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