当前解析结果
SmilChr01G001708| 统一新 Gene ID | SmilChr01G001708 |
|---|---|
| 名称 | SmilChr01G001708 |
| 描述 | ABC transporter B family member 1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 31503072 - 31504277 / + |
| NCBI Gene ID | LOC131006282 |
|---|---|
| GeneID | 131006282 |
| locus_tag | - |
| NCBI Name | LOC131006282 |
| 原始查询 | SmilChr01G001708 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 1-like |
| 产物 | ABC transporter B family member 1-like |
| Arabidopsis | AT2G36910 (ABCB1)ATP binding cassette subfamily B1 [Source:NCBI gene (formerly Entrezgene);Acc:818265] identity=78.2; qcov=0.772; evalue=1.09e-119; confidence=high |
| Rice | Os08g0564300 (OsABCB22)- identity=69.2; qcov=0.729; evalue=3.32e-106; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006282 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057789463.1 |
| 2 | Vacuole | 液泡 | 0.80000 | XP_057789463.1 |
| 3 | Cell membrane | 细胞膜 | 0.60000 | XP_057789463.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057789463.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057789463.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:31503089 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr1:31503150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B129,B32,D6 |
Chr1:31503182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C43 |
Chr1:31503183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:31503210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr1:31503211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr1:31503280 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B77,C65 |
Chr1:31503321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B64,C42 |
Chr1:31503332 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr1:31503347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr1:31503348 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:31503350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057789463.1PF00664
ABC_membrane 95-278 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789463.1 |
Pfam | PF00664 |
ABC_membrane | Family | 95 | 278 | 1e-34 | 121.2 | ABC transporter transmembrane region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。