当前解析结果
SmilChr01G001711| 统一新 Gene ID | SmilChr01G001711 |
|---|---|
| 名称 | SmilChr01G001711 |
| 描述 | uncharacterized SmilChr01G001711 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 31581958 - 31585419 / + |
| NCBI Gene ID | LOC131020352 |
|---|---|
| GeneID | 131020352 |
| locus_tag | - |
| NCBI Name | LOC131020352 |
| 原始查询 | SmilChr01G001711 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ser/arg-rich protein kinase 4 [Source:NCBI gene (formerly Entrezgene);Acc:824469]; symbol=SRPK4; hit=AT3G53030; species=arabidopsis; confidence=high |
| 产物 | ser/arg-rich protein kinase 4 [Source:NCBI gene (formerly Entrezgene);Acc:824469]; symbol=SRPK4; hit=AT3G53030; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G53030 (SRPK4)ser/arg-rich protein kinase 4 [Source:NCBI gene (formerly Entrezgene);Acc:824469] identity=70.2; qcov=0.948; evalue=0; confidence=high |
| Rice | Os03g0748400- identity=69.6; qcov=0.69; evalue=3.53e-177; confidence=high |
| GO | GO:0000245 (spliceosomal complex assembly); GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0050684 (regulation of mRNA processing) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020352 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057805092.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057805092.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057805092.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057805092.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057805092.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:31582409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B136,C37,C61,C82 |
Chr1:31583344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,B87 |
Chr1:31583442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:31583605 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:31583641 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr1:31583698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr1:31583829 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C44,D4 |
Chr1:31584725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr1:31584873 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr1:31584896 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B3,B63,B86,C15,D10 |
Chr1:31584930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057805092.1PF00069
Pkinase 51-191 aa
PF07714
PK_Tyr_Ser-Thr 53-190 aa
PF07714
PK_Tyr_Ser-Thr 307-372 aa
PF00069
Pkinase 315-478 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057805092.1 |
Pfam | PF00069 |
Pkinase | Domain | 51 | 191 | 1.2e-43 | 150.1 | Protein kinase domain |
XP_057805092.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 53 | 190 | 6.1e-19 | 69.0 | Protein tyrosine and serine/threonine kinase |
XP_057805092.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 307 | 372 | 6.1e-19 | 69.0 | Protein tyrosine and serine/threonine kinase |
XP_057805092.1 |
Pfam | PF00069 |
Pkinase | Domain | 315 | 478 | 1.2e-43 | 150.1 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。