当前解析结果
SmilChr01G001712| 统一新 Gene ID | SmilChr01G001712 |
|---|---|
| 名称 | SmilChr01G001712 |
| 描述 | uncharacterized SmilChr01G001712 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 31592663 - 31598105 / + |
| NCBI Gene ID | LOC131020385 |
|---|---|
| GeneID | 131020385 |
| locus_tag | - |
| NCBI Name | LOC131020385 |
| 原始查询 | SmilChr01G001712 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832345]; symbol=AT5G22820; hit=AT5G22820; species=arabidopsis; confidence=high |
| 产物 | ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832345]; symbol=AT5G22820; hit=AT5G22820; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G22820 (AT5G22820)ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832345] identity=47.9; qcov=0.995; evalue=2.13e-127; confidence=high |
| Rice | Os03g0684100- identity=38.3; qcov=0.998; evalue=2.57e-81; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020385 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057805139.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057805146.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057805139.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057805139.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057805139.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:31593582 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,D5 |
Chr1:31594875 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr1:31594878 |
T |
TCC |
2bp_insertion | frameshift_variant | 132 | A1,A13,A15,A16,A19,A23,A24,A25,A4,A6,A7,A8,A9,B10,B108,B109,B110,B111,B112,B117,B119,B12,B125,B128,B13,B130,B132,B138,B139,B16,B18,B19,B23,B24,B25,B26,B3,B30,B31,B36,B37,B4,B40,B42,B43,B45,B5,B50,B52,B54,B59,B60,B62,B63,B64,B65,B67,B68,B70,B73,B74,B76,B77,B81,B84,B86,B87,B88,B89,B9,B90,B91,B92,B95,B98,B99,C1,C10,C12,C14,C16,C2,C23,C26,C27,C28,C29,C3,C30,C32,C34,C35,C36,C40,C41,C42,C44,C46,C47,C5,C50,C53,C54,C55,C56,C58,C59,C6,C62,C63,C64,C66,C68,C7,C70,C73,C74,C78,C8,C81,C83,C86,C87,D1,D10,D2,D4,D5,D6,D7,D8,D9 |
Chr1:31594915 |
T |
TA |
1bp_insertion | frameshift_variant | 47 | A10,A23,A7,A8,B101,B112,B135,B136,B2,B25,B26,B27,B31,B33,B35,B38,B39,B40,B44,B51,B56,B61,B69,B76,B78,B96,C1,C18,C20,C21,C23,C26,C27,C31,C37,C4,C40,C43,C55,C6,C62,C73,C78,C79,C8,C85,D11 |
Chr1:31597050 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B40,B63 |
Chr1:31597098 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr1:31597240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B3,B86,C15 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。